Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 13126 | 0.72 | 0.717301 |
Target: 5'- cGCCgCGCGGCUCGcUCG-CGCGggUCGUc -3' miRNA: 3'- -CGG-GCGUCGAGCuAGCaGUGCa-AGUA- -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 15017 | 0.66 | 0.964101 |
Target: 5'- gGCUgGCuGCUCG-UCGUCACcuuccuggugcuGUUCAUc -3' miRNA: 3'- -CGGgCGuCGAGCuAGCAGUG------------CAAGUA- -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 23775 | 0.69 | 0.874914 |
Target: 5'- gGCCCG-AGCgagCGAUCGUCACcaUUUAUa -3' miRNA: 3'- -CGGGCgUCGa--GCUAGCAGUGc-AAGUA- -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 32120 | 0.7 | 0.852391 |
Target: 5'- aGCCCGCA-CUCG-UCGaUCACGaUCAc -3' miRNA: 3'- -CGGGCGUcGAGCuAGC-AGUGCaAGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 36377 | 0.66 | 0.968522 |
Target: 5'- cGCCCGCGGCgaagCGGUCGacccagaaaucgacCGCGUa--- -3' miRNA: 3'- -CGGGCGUCGa---GCUAGCa-------------GUGCAagua -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 41258 | 0.68 | 0.925259 |
Target: 5'- cGCCgGCGGCcCG-UCGUCGCGcUCc- -3' miRNA: 3'- -CGGgCGUCGaGCuAGCAGUGCaAGua -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 43524 | 0.68 | 0.919778 |
Target: 5'- cGCCgGUAGCUCGcgagccCGUCcACGUUCc- -3' miRNA: 3'- -CGGgCGUCGAGCua----GCAG-UGCAAGua -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 49024 | 0.66 | 0.96069 |
Target: 5'- cGgCCGCGGCgucguccggcgCGGUCGUCAgCGUcCAg -3' miRNA: 3'- -CgGGCGUCGa----------GCUAGCAGU-GCAaGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 50830 | 0.68 | 0.908108 |
Target: 5'- cCCCGCc-CUCGggCGUCGCGaUCAa -3' miRNA: 3'- cGGGCGucGAGCuaGCAGUGCaAGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 52813 | 0.7 | 0.827256 |
Target: 5'- cGCCgGCAGCUCGuccugccguUCGUagaggccggucagCACGUUCGc -3' miRNA: 3'- -CGGgCGUCGAGCu--------AGCA-------------GUGCAAGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 71399 | 0.68 | 0.908108 |
Target: 5'- gGUCUGCGGCUCGGgccggccgUCGUCcaGCGUggacUCGUa -3' miRNA: 3'- -CGGGCGUCGAGCU--------AGCAG--UGCA----AGUA- -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 72059 | 0.67 | 0.930504 |
Target: 5'- aCCCGCAGC-CGGUUGccCGCGUgcccuUCGUa -3' miRNA: 3'- cGGGCGUCGaGCUAGCa-GUGCA-----AGUA- -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 78459 | 0.66 | 0.96069 |
Target: 5'- cGCUCGCGGuCUCGGUCaUCAgGcgCAc -3' miRNA: 3'- -CGGGCGUC-GAGCUAGcAGUgCaaGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 82115 | 0.69 | 0.895509 |
Target: 5'- cCCCGCAGCcuccUCGGcgugggCGUCACGUgggCGg -3' miRNA: 3'- cGGGCGUCG----AGCUa-----GCAGUGCAa--GUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 82816 | 0.66 | 0.964101 |
Target: 5'- aCCCGCGGCUCGcUCGagagacgCACGg---- -3' miRNA: 3'- cGGGCGUCGAGCuAGCa------GUGCaagua -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 92331 | 0.66 | 0.9673 |
Target: 5'- gGCCCgggcggGCGGCUCGG-CGUCaACG-UCGa -3' miRNA: 3'- -CGGG------CGUCGAGCUaGCAG-UGCaAGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 104626 | 0.69 | 0.895509 |
Target: 5'- gGCCaGCAGCUCG-UUGUCGCGcgCc- -3' miRNA: 3'- -CGGgCGUCGAGCuAGCAGUGCaaGua -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 106843 | 0.69 | 0.894854 |
Target: 5'- gGCCUGCGGCuccgccuacaacaUCGAgcUCGUCGCcUUCGg -3' miRNA: 3'- -CGGGCGUCG-------------AGCU--AGCAGUGcAAGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 115095 | 0.75 | 0.555809 |
Target: 5'- cGCCCGCAGC-CGcgCGUcCGCGUcgUCAc -3' miRNA: 3'- -CGGGCGUCGaGCuaGCA-GUGCA--AGUa -5' |
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11138 | 5' | -54.6 | NC_002794.1 | + | 119796 | 0.66 | 0.9673 |
Target: 5'- gGUCCGCcGaCUUGAgCGUCGCGUggcUCAg -3' miRNA: 3'- -CGGGCGuC-GAGCUaGCAGUGCA---AGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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