Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 195123 | 0.7 | 0.836379 |
Target: 5'- cGCCCGCGGCgCGcgCGggcUCGCGUaCAc -3' miRNA: 3'- -CGGGCGUCGaGCuaGC---AGUGCAaGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 193058 | 0.66 | 0.970292 |
Target: 5'- cGCCCGCaccGGCUgCGGgcCGUCGCGggaCAg -3' miRNA: 3'- -CGGGCG---UCGA-GCUa-GCAGUGCaa-GUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 192431 | 0.67 | 0.944825 |
Target: 5'- gGUCCGCGGC-CGGcgCGUCGCGcgCc- -3' miRNA: 3'- -CGGGCGUCGaGCUa-GCAGUGCaaGua -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 191011 | 0.69 | 0.867614 |
Target: 5'- aUCgGCcGUUCGAUCGgCACGUUCAg -3' miRNA: 3'- cGGgCGuCGAGCUAGCaGUGCAAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 190932 | 0.66 | 0.970292 |
Target: 5'- gGCCCGCAGC-CGGUag-CACGg---- -3' miRNA: 3'- -CGGGCGUCGaGCUAgcaGUGCaagua -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 187914 | 0.66 | 0.957061 |
Target: 5'- cGCCCGCcgGGCcccgccgCGAcCGUCGCG-UCAc -3' miRNA: 3'- -CGGGCG--UCGa------GCUaGCAGUGCaAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 185172 | 0.66 | 0.964101 |
Target: 5'- cGCCggCGCGGCgCGGUCGgCGCGgUCGg -3' miRNA: 3'- -CGG--GCGUCGaGCUAGCaGUGCaAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 183067 | 0.66 | 0.965406 |
Target: 5'- cGCUCGC-GCUggacgggaacgagagCGAggUCGUCACGUUCc- -3' miRNA: 3'- -CGGGCGuCGA---------------GCU--AGCAGUGCAAGua -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 181505 | 0.68 | 0.908108 |
Target: 5'- aGCCCGaC-GCUCGuccacGUCGUC-CGUUCGc -3' miRNA: 3'- -CGGGC-GuCGAGC-----UAGCAGuGCAAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 179454 | 0.67 | 0.944825 |
Target: 5'- -aCCGC--CUCGGUCGUgAUGUUCAg -3' miRNA: 3'- cgGGCGucGAGCUAGCAgUGCAAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 178543 | 0.66 | 0.970292 |
Target: 5'- uCCCGCuGC-CGAUCGggcacCACGUcuUCAc -3' miRNA: 3'- cGGGCGuCGaGCUAGCa----GUGCA--AGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 175431 | 0.69 | 0.895509 |
Target: 5'- -gCCGCGGCgcagaCGAUCGUCGuCGaUCAa -3' miRNA: 3'- cgGGCGUCGa----GCUAGCAGU-GCaAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 157126 | 0.66 | 0.957061 |
Target: 5'- cGUCCaaGUGGUgaaacacgcCGGUCGUCGCGUUCGUc -3' miRNA: 3'- -CGGG--CGUCGa--------GCUAGCAGUGCAAGUA- -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 142801 | 0.66 | 0.964101 |
Target: 5'- -gCCGCAGUUCGGccgggucggccUCGUucaacgcgugCGCGUUCAg -3' miRNA: 3'- cgGGCGUCGAGCU-----------AGCA----------GUGCAAGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 138563 | 0.72 | 0.756152 |
Target: 5'- cGCCCGCuccgucgucGCUCGAUCGagGCGcgUCGg -3' miRNA: 3'- -CGGGCGu--------CGAGCUAGCagUGCa-AGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 136323 | 0.68 | 0.908108 |
Target: 5'- cGCCCGCAGCUcuucucgguggCGGgccagCGUgGCGUUgAg -3' miRNA: 3'- -CGGGCGUCGA-----------GCUa----GCAgUGCAAgUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 131878 | 0.68 | 0.925259 |
Target: 5'- gGCgCCGCGGCcucaucUCGGUCGcgCGCGggCAc -3' miRNA: 3'- -CG-GGCGUCG------AGCUAGCa-GUGCaaGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 124570 | 0.66 | 0.96069 |
Target: 5'- cGCCauccaGCAgcugcGCUCGAUCGUgCGCGUg--- -3' miRNA: 3'- -CGGg----CGU-----CGAGCUAGCA-GUGCAagua -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 119796 | 0.66 | 0.9673 |
Target: 5'- gGUCCGCcGaCUUGAgCGUCGCGUggcUCAg -3' miRNA: 3'- -CGGGCGuC-GAGCUaGCAGUGCA---AGUa -5' |
|||||||
11138 | 5' | -54.6 | NC_002794.1 | + | 115095 | 0.75 | 0.555809 |
Target: 5'- cGCCCGCAGC-CGcgCGUcCGCGUcgUCAc -3' miRNA: 3'- -CGGGCGUCGaGCuaGCA-GUGCA--AGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home