miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 119533 0.66 0.82944
Target:  5'- cGGACcCCU-CGUCCGCggCCGUCGcCGGc -3'
miRNA:   3'- -UUUGuGGAgGCGGGCG--GGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 77561 0.66 0.82944
Target:  5'- cGAAcCGCCgacCCGCCgCGCCUucuaCGUCGGc -3'
miRNA:   3'- -UUU-GUGGa--GGCGG-GCGGGca--GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 112010 0.66 0.82944
Target:  5'- --uCACCagUCgGCgCCGCCCGaaggCGUCGa -3'
miRNA:   3'- uuuGUGG--AGgCG-GGCGGGCa---GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 76589 0.66 0.82944
Target:  5'- -cGCACCcgcucUUCGaCCCGCCgGgUCGUCGu -3'
miRNA:   3'- uuUGUGG-----AGGC-GGGCGGgC-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 34821 0.66 0.821408
Target:  5'- cGACACCacccccUCGCCgGCgCCGgagcgggCGUCGGa -3'
miRNA:   3'- uUUGUGGa-----GGCGGgCG-GGCa------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 45935 0.66 0.821408
Target:  5'- -cGCGCUUCCccGCCCGgugaCCGUCucUCGGg -3'
miRNA:   3'- uuUGUGGAGG--CGGGCg---GGCAGc-AGCC- -5'
11139 3' -60.3 NC_002794.1 + 149230 0.66 0.821408
Target:  5'- gAGGCGCCgCCGCCguCGCCgggGUCG-CGGc -3'
miRNA:   3'- -UUUGUGGaGGCGG--GCGGg--CAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 52608 0.66 0.821408
Target:  5'- --cCGCCcgagaCGCCCGCCCGaccgccgccgCGUCGa -3'
miRNA:   3'- uuuGUGGag---GCGGGCGGGCa---------GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 27401 0.66 0.821408
Target:  5'- gGAugACCgcucgaCCGgCCGCCCG-CGUCc- -3'
miRNA:   3'- -UUugUGGa-----GGCgGGCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 124141 0.66 0.821408
Target:  5'- cGGCGCCcgggagcggucUCCGCgggGCCCGggagagCGUCGGg -3'
miRNA:   3'- uUUGUGG-----------AGGCGgg-CGGGCa-----GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 41383 0.66 0.815693
Target:  5'- cGGCGCCUCCuucggcgGCCCcgauuuccccgucucGCgacuccUCGUCGUCGGg -3'
miRNA:   3'- uUUGUGGAGG-------CGGG---------------CG------GGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 124443 0.66 0.813221
Target:  5'- -cGCGCgUCCucgcuuuCUCGUUCGUCGUCGGc -3'
miRNA:   3'- uuUGUGgAGGc------GGGCGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 57465 0.66 0.813221
Target:  5'- -cACGCgCUgCGCCCGCUCGUCacgCGc -3'
miRNA:   3'- uuUGUG-GAgGCGGGCGGGCAGca-GCc -5'
11139 3' -60.3 NC_002794.1 + 11858 0.66 0.813221
Target:  5'- --cCGCCggcgacgaCCGCCCGcCCCG-CGaCGGg -3'
miRNA:   3'- uuuGUGGa-------GGCGGGC-GGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 141576 0.66 0.813221
Target:  5'- ---gGCCUCCGUgaucaugaCGCCCG-CGUCGc -3'
miRNA:   3'- uuugUGGAGGCGg-------GCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 134873 0.66 0.813221
Target:  5'- cGAGCACCgaCGCCUGCgCgCGUUGuaUCGGa -3'
miRNA:   3'- -UUUGUGGagGCGGGCG-G-GCAGC--AGCC- -5'
11139 3' -60.3 NC_002794.1 + 143274 0.66 0.813221
Target:  5'- cGGC-CCggcgCCGgCCGCUCGggGUCGGg -3'
miRNA:   3'- uUUGuGGa---GGCgGGCGGGCagCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 133356 0.66 0.804887
Target:  5'- --uCGCCUCuugcuuuuCGCUCGUCgGUCGUCGu -3'
miRNA:   3'- uuuGUGGAG--------GCGGGCGGgCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 119612 0.66 0.804887
Target:  5'- cAGCGCCUCgaggaaCGUCuCGgCCGUCGUCa- -3'
miRNA:   3'- uUUGUGGAG------GCGG-GCgGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 31369 0.66 0.804887
Target:  5'- nGAAguCgUCCuCCUcCCCGUCGUCGGc -3'
miRNA:   3'- -UUUguGgAGGcGGGcGGGCAGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.