miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 18617 0.67 0.751281
Target:  5'- cGGCACCggCCGCCCcuccgacGCCCGcucCGcCGGc -3'
miRNA:   3'- uUUGUGGa-GGCGGG-------CGGGCa--GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 116896 0.67 0.743033
Target:  5'- cGGCGCCgucuccggCgGCCgGUCCGgCGUCGGc -3'
miRNA:   3'- uUUGUGGa-------GgCGGgCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 194387 0.67 0.743033
Target:  5'- -cACACCagCUGCgCCGCCCgGUCGuUCGc -3'
miRNA:   3'- uuUGUGGa-GGCG-GGCGGG-CAGC-AGCc -5'
11139 3' -60.3 NC_002794.1 + 150338 0.67 0.743033
Target:  5'- uGGACGCacggCUGUCUGCUCGUCG-CGGc -3'
miRNA:   3'- -UUUGUGga--GGCGGGCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 3976 0.67 0.737494
Target:  5'- uAGACAagaCUCCGCCUacgGaCCCGgaccacgccucuucaUCGUCGGa -3'
miRNA:   3'- -UUUGUg--GAGGCGGG---C-GGGC---------------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 63890 0.67 0.743033
Target:  5'- -uGCACCUCUuCUCGCCgGcCGUCGc -3'
miRNA:   3'- uuUGUGGAGGcGGGCGGgCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 152234 0.67 0.733786
Target:  5'- -cGCGCCacgUCGCgCGCaCCGUCGccgUCGGa -3'
miRNA:   3'- uuUGUGGa--GGCGgGCG-GGCAGC---AGCC- -5'
11139 3' -60.3 NC_002794.1 + 85470 0.67 0.752193
Target:  5'- cGGCGCC-CgGCCUccgGCCUGUCGUCu- -3'
miRNA:   3'- uUUGUGGaGgCGGG---CGGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 183009 0.67 0.752193
Target:  5'- cGGGCGCC-CCGCgCgCGCCCGcCGcccCGGa -3'
miRNA:   3'- -UUUGUGGaGGCG-G-GCGGGCaGCa--GCC- -5'
11139 3' -60.3 NC_002794.1 + 195463 0.67 0.757644
Target:  5'- cGACGCC-CCGCuuGCCCGgacucgcccgccgCG-CGGc -3'
miRNA:   3'- uUUGUGGaGGCGggCGGGCa------------GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 189591 0.67 0.77022
Target:  5'- cGGCGCCccuuagcccgUCCGCCCGagaCCCGcCGacUCGGc -3'
miRNA:   3'- uUUGUGG----------AGGCGGGC---GGGCaGC--AGCC- -5'
11139 3' -60.3 NC_002794.1 + 34771 0.67 0.77022
Target:  5'- cGGCACggCCGCCCGCgCCagccgaGUCGGc -3'
miRNA:   3'- uUUGUGgaGGCGGGCG-GGcag---CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 183536 0.67 0.77022
Target:  5'- -cGCGCC-CCGUCCGCCCGgggacacugcgCGcCGa -3'
miRNA:   3'- uuUGUGGaGGCGGGCGGGCa----------GCaGCc -5'
11139 3' -60.3 NC_002794.1 + 58300 0.67 0.767542
Target:  5'- gGAGCACCacgagaCCGCCgCGCuCUGcacgccgcgcgugcUCGUCGGg -3'
miRNA:   3'- -UUUGUGGa-----GGCGG-GCG-GGC--------------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 36509 0.67 0.769328
Target:  5'- --cCACCUCgGCCagcguguCGCCCGUCGcCu- -3'
miRNA:   3'- uuuGUGGAGgCGG-------GCGGGCAGCaGcc -5'
11139 3' -60.3 NC_002794.1 + 113521 0.67 0.761258
Target:  5'- gAGGgAgCUCCGCCgGCUCGgCGUCGc -3'
miRNA:   3'- -UUUgUgGAGGCGGgCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 187555 0.67 0.761258
Target:  5'- --cCACCgCCGCCgucggGCCCGUacccgcCGUCGGc -3'
miRNA:   3'- uuuGUGGaGGCGGg----CGGGCA------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 26643 0.67 0.761258
Target:  5'- -cGCACCcggacggCgGCCgGCUCGUCGgCGGg -3'
miRNA:   3'- uuUGUGGa------GgCGGgCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 19799 0.67 0.761258
Target:  5'- -cGCugCUCCGCUCGgaCCGcgCGcCGGa -3'
miRNA:   3'- uuUGugGAGGCGGGCg-GGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 48086 0.67 0.761258
Target:  5'- gGAGCAgCCgCCGCUCGCCgG-CGUCaGGc -3'
miRNA:   3'- -UUUGU-GGaGGCGGGCGGgCaGCAG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.