miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 58300 0.67 0.767542
Target:  5'- gGAGCACCacgagaCCGCCgCGCuCUGcacgccgcgcgugcUCGUCGGg -3'
miRNA:   3'- -UUUGUGGa-----GGCGG-GCG-GGC--------------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 36509 0.67 0.769328
Target:  5'- --cCACCUCgGCCagcguguCGCCCGUCGcCu- -3'
miRNA:   3'- uuuGUGGAGgCGG-------GCGGGCAGCaGcc -5'
11139 3' -60.3 NC_002794.1 + 113521 0.67 0.761258
Target:  5'- gAGGgAgCUCCGCCgGCUCGgCGUCGc -3'
miRNA:   3'- -UUUgUgGAGGCGGgCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 187555 0.67 0.761258
Target:  5'- --cCACCgCCGCCgucggGCCCGUacccgcCGUCGGc -3'
miRNA:   3'- uuuGUGGaGGCGGg----CGGGCA------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 48086 0.67 0.761258
Target:  5'- gGAGCAgCCgCCGCUCGCCgG-CGUCaGGc -3'
miRNA:   3'- -UUUGU-GGaGGCGGGCGGgCaGCAG-CC- -5'
11139 3' -60.3 NC_002794.1 + 26643 0.67 0.761258
Target:  5'- -cGCACCcggacggCgGCCgGCUCGUCGgCGGg -3'
miRNA:   3'- uuUGUGGa------GgCGGgCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 10308 0.67 0.743033
Target:  5'- cGGCGagagaCUCCGacgaCUCGgCCGUCGUCGGc -3'
miRNA:   3'- uUUGUg----GAGGC----GGGCgGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 43001 0.67 0.752193
Target:  5'- cAGGCACCggUCCGaguagcUCCGCagGUCGUCGGc -3'
miRNA:   3'- -UUUGUGG--AGGC------GGGCGggCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 30544 0.67 0.752193
Target:  5'- aAGAC-CCUCggauggauccgCGCCCGCUCGuUCGUCa- -3'
miRNA:   3'- -UUUGuGGAG-----------GCGGGCGGGC-AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 85470 0.67 0.752193
Target:  5'- cGGCGCC-CgGCCUccgGCCUGUCGUCu- -3'
miRNA:   3'- uUUGUGGaGgCGGG---CGGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 183009 0.67 0.752193
Target:  5'- cGGGCGCC-CCGCgCgCGCCCGcCGcccCGGa -3'
miRNA:   3'- -UUUGUGGaGGCG-G-GCGGGCaGCa--GCC- -5'
11139 3' -60.3 NC_002794.1 + 195463 0.67 0.757644
Target:  5'- cGACGCC-CCGCuuGCCCGgacucgcccgccgCG-CGGc -3'
miRNA:   3'- uUUGUGGaGGCGggCGGGCa------------GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 19799 0.67 0.761258
Target:  5'- -cGCugCUCCGCUCGgaCCGcgCGcCGGa -3'
miRNA:   3'- uuUGugGAGGCGGGCg-GGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 189916 0.68 0.686519
Target:  5'- -cGCGCgaCCGCCCGCUCGccCGaCGGc -3'
miRNA:   3'- uuUGUGgaGGCGGGCGGGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 185163 0.68 0.696084
Target:  5'- -cGCGuCCUCCGCCgGCgCGgcgCgGUCGGc -3'
miRNA:   3'- uuUGU-GGAGGCGGgCGgGCa--G-CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 60669 0.68 0.696084
Target:  5'- -cGCGCCgCCGCCgCcUCCGUCGaCGGg -3'
miRNA:   3'- uuUGUGGaGGCGG-GcGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 118296 0.68 0.686519
Target:  5'- -cGCGCCgggCGCgUCGCUCGUCGUCGu -3'
miRNA:   3'- uuUGUGGag-GCG-GGCGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 111389 0.68 0.715062
Target:  5'- -uGCACCUCCgGCCagCGCUCGggGUCGa -3'
miRNA:   3'- uuUGUGGAGG-CGG--GCGGGCagCAGCc -5'
11139 3' -60.3 NC_002794.1 + 194857 0.68 0.715062
Target:  5'- -cGCACCgUCUGCCCGCgCCG-CG-CGa -3'
miRNA:   3'- uuUGUGG-AGGCGGGCG-GGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 52904 0.68 0.686519
Target:  5'- cGGCGCCgccgCCGUcgCCGCcgCCGUCGcUCGGc -3'
miRNA:   3'- uUUGUGGa---GGCG--GGCG--GGCAGC-AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.