miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 61855 0.71 0.495749
Target:  5'- -cGCGCCccauggacgaCGCCgCGCgCCGUCGUCGGc -3'
miRNA:   3'- uuUGUGGag--------GCGG-GCG-GGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 73269 0.71 0.503971
Target:  5'- --cCACCUCCGCCgaccgcggcgacgCGCCCgGUC-UCGGa -3'
miRNA:   3'- uuuGUGGAGGCGG-------------GCGGG-CAGcAGCC- -5'
11139 3' -60.3 NC_002794.1 + 183736 0.71 0.510406
Target:  5'- -cGCGCCcagcaggaucaggCCGCCCGCCacgaagaaCGUCGUCGa -3'
miRNA:   3'- uuUGUGGa------------GGCGGGCGG--------GCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 62518 0.71 0.522446
Target:  5'- cGGCGCCUCCGCCCaccgugacgaagaGCCCGaCGcccaucCGGa -3'
miRNA:   3'- uUUGUGGAGGCGGG-------------CGGGCaGCa-----GCC- -5'
11139 3' -60.3 NC_002794.1 + 66010 0.71 0.532718
Target:  5'- cGGCACCgaggcggCCGCggucgUCGCCguCGUCGUCGGg -3'
miRNA:   3'- uUUGUGGa------GGCG-----GGCGG--GCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 51687 0.71 0.523376
Target:  5'- cGACGCCaCCGCCUGCCCGUgCuacCGGc -3'
miRNA:   3'- uUUGUGGaGGCGGGCGGGCA-Gca-GCC- -5'
11139 3' -60.3 NC_002794.1 + 193800 0.7 0.570628
Target:  5'- cGACGCCggCGCCCGCUCGUcuggcgccgacgCGUCGcGg -3'
miRNA:   3'- uUUGUGGagGCGGGCGGGCA------------GCAGC-C- -5'
11139 3' -60.3 NC_002794.1 + 188346 0.7 0.589838
Target:  5'- cGGCGCCgUCgCGCCCGUCCGgccggCGgCGGc -3'
miRNA:   3'- uUUGUGG-AG-GCGGGCGGGCa----GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 184114 0.7 0.599487
Target:  5'- cAGCGCC-CCGCUCGCCgG-CGUCa- -3'
miRNA:   3'- uUUGUGGaGGCGGGCGGgCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 14136 0.7 0.570628
Target:  5'- cAACugUaCCGUCCgGUCCGUCGUCGa -3'
miRNA:   3'- uUUGugGaGGCGGG-CGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 156101 0.7 0.589838
Target:  5'- cGAACGCUUUCGCgUCGCCgagUGUCGUCGa -3'
miRNA:   3'- -UUUGUGGAGGCG-GGCGG---GCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 145622 0.7 0.584061
Target:  5'- cGAGgAgCUCgGCCCggagaucggacccgaGCUCGUCGUCGGg -3'
miRNA:   3'- -UUUgUgGAGgCGGG---------------CGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 49220 0.7 0.589838
Target:  5'- gAGGCGCCgcgCCGCCaacagGgCCGUCGaCGGg -3'
miRNA:   3'- -UUUGUGGa--GGCGGg----CgGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 131350 0.7 0.586948
Target:  5'- uGACGgUUUCGCCCgugaucaccgcuucGCCCGUgGUCGGc -3'
miRNA:   3'- uUUGUgGAGGCGGG--------------CGGGCAgCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 181766 0.7 0.570628
Target:  5'- uGACGCCgauggcgCCGCgCCGCCgCGUCucguUCGGg -3'
miRNA:   3'- uUUGUGGa------GGCG-GGCGG-GCAGc---AGCC- -5'
11139 3' -60.3 NC_002794.1 + 66292 0.7 0.561079
Target:  5'- cGAGCGCCcgUCCGUCCGCCC-UCGcuUCGc -3'
miRNA:   3'- -UUUGUGG--AGGCGGGCGGGcAGC--AGCc -5'
11139 3' -60.3 NC_002794.1 + 29195 0.7 0.561079
Target:  5'- --uCACCagUCCGUCCGUCCGgcgGUCGGc -3'
miRNA:   3'- uuuGUGG--AGGCGGGCGGGCag-CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 184560 0.7 0.551574
Target:  5'- cGGACGCCUCaCGCgCCGCCgCGgCGgCGGc -3'
miRNA:   3'- -UUUGUGGAG-GCG-GGCGG-GCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 124381 0.7 0.589838
Target:  5'- --uCGCCUCggucgcggcggCGCgUCGCCgGUCGUCGGg -3'
miRNA:   3'- uuuGUGGAG-----------GCG-GGCGGgCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 72369 0.69 0.64793
Target:  5'- -uGCGCgUCCGCggccCCGgCCGUCGUCu- -3'
miRNA:   3'- uuUGUGgAGGCG----GGCgGGCAGCAGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.