Results 61 - 80 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 84111 | 0.69 | 0.628539 |
Target: 5'- cGGACACCccgcgCCGCCgCGCCCGacCGcacgCGGa -3' miRNA: 3'- -UUUGUGGa----GGCGG-GCGGGCa-GCa---GCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 110331 | 0.69 | 0.617875 |
Target: 5'- cGACGCCgcgcggggggucUCCGCCguggcgaCGCCuCGUCGUCGu -3' miRNA: 3'- uUUGUGG------------AGGCGG-------GCGG-GCAGCAGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 137128 | 0.69 | 0.609158 |
Target: 5'- cGAACugucguCCgUCCGCCCGCCCGgccggcCGcccUCGGu -3' miRNA: 3'- -UUUGu-----GG-AGGCGGGCGGGCa-----GC---AGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 72369 | 0.69 | 0.64793 |
Target: 5'- -uGCGCgUCCGCggccCCGgCCGUCGUCu- -3' miRNA: 3'- uuUGUGgAGGCG----GGCgGGCAGCAGcc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 181151 | 0.69 | 0.618844 |
Target: 5'- --cCGCCUCCaGCCCGUCCGcCG-CGc -3' miRNA: 3'- uuuGUGGAGG-CGGGCGGGCaGCaGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 31401 | 0.69 | 0.628539 |
Target: 5'- --cCGCCgcgcCCGCCgCGCCCGccgccuUCGUCGa -3' miRNA: 3'- uuuGUGGa---GGCGG-GCGGGC------AGCAGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 123890 | 0.69 | 0.634358 |
Target: 5'- -uGCugCguUCCGCCCGCCCGagcugccgccucgCGcCGGa -3' miRNA: 3'- uuUGugG--AGGCGGGCGGGCa------------GCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 194857 | 0.68 | 0.715062 |
Target: 5'- -cGCACCgUCUGCCCGCgCCG-CG-CGa -3' miRNA: 3'- uuUGUGG-AGGCGGGCG-GGCaGCaGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 111389 | 0.68 | 0.715062 |
Target: 5'- -uGCACCUCCgGCCagCGCUCGggGUCGa -3' miRNA: 3'- uuUGUGGAGG-CGG--GCGGGCagCAGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 118296 | 0.68 | 0.686519 |
Target: 5'- -cGCGCCgggCGCgUCGCUCGUCGUCGu -3' miRNA: 3'- uuUGUGGag-GCG-GGCGGGCAGCAGCc -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 60669 | 0.68 | 0.696084 |
Target: 5'- -cGCGCCgCCGCCgCcUCCGUCGaCGGg -3' miRNA: 3'- uuUGUGGaGGCGG-GcGGGCAGCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 185163 | 0.68 | 0.696084 |
Target: 5'- -cGCGuCCUCCGCCgGCgCGgcgCgGUCGGc -3' miRNA: 3'- uuUGU-GGAGGCGGgCGgGCa--G-CAGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 189916 | 0.68 | 0.686519 |
Target: 5'- -cGCGCgaCCGCCCGCUCGccCGaCGGc -3' miRNA: 3'- uuUGUGgaGGCGGGCGGGCa-GCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 190661 | 0.68 | 0.676914 |
Target: 5'- --uCACgUCgCGCCCGCCgCGcCGcCGGg -3' miRNA: 3'- uuuGUGgAG-GCGGGCGG-GCaGCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 78056 | 0.68 | 0.715062 |
Target: 5'- aGAACGCCcgCCG-CCGCCCGaaCGcCGGc -3' miRNA: 3'- -UUUGUGGa-GGCgGGCGGGCa-GCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 101950 | 0.68 | 0.667276 |
Target: 5'- -uGCugCcCUGCCUGCCCGUgG-CGGc -3' miRNA: 3'- uuUGugGaGGCGGGCGGGCAgCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 19357 | 0.68 | 0.667276 |
Target: 5'- --uCGCCgcCCGcCCCGCCCGgaUCGggCGGg -3' miRNA: 3'- uuuGUGGa-GGC-GGGCGGGC--AGCa-GCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 181509 | 0.68 | 0.667276 |
Target: 5'- cGACGCUcguccacgucgUCCGUUCGCCCGcCGcCGGc -3' miRNA: 3'- uUUGUGG-----------AGGCGGGCGGGCaGCaGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 185766 | 0.68 | 0.667276 |
Target: 5'- cGGCGCggCCGCCCGUCacaCGUCGGc -3' miRNA: 3'- uUUGUGgaGGCGGGCGGgcaGCAGCC- -5' |
|||||||
11139 | 3' | -60.3 | NC_002794.1 | + | 115309 | 0.68 | 0.676914 |
Target: 5'- -uGCGCCgCCGUCCGCaCgGUCGccgCGGc -3' miRNA: 3'- uuUGUGGaGGCGGGCG-GgCAGCa--GCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home