miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 189916 0.68 0.686519
Target:  5'- -cGCGCgaCCGCCCGCUCGccCGaCGGc -3'
miRNA:   3'- uuUGUGgaGGCGGGCGGGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 181509 0.68 0.667276
Target:  5'- cGACGCUcguccacgucgUCCGUUCGCCCGcCGcCGGc -3'
miRNA:   3'- uUUGUGG-----------AGGCGGGCGGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 78056 0.68 0.715062
Target:  5'- aGAACGCCcgCCG-CCGCCCGaaCGcCGGc -3'
miRNA:   3'- -UUUGUGGa-GGCgGGCGGGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 194857 0.68 0.715062
Target:  5'- -cGCACCgUCUGCCCGCgCCG-CG-CGa -3'
miRNA:   3'- uuUGUGG-AGGCGGGCG-GGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 111389 0.68 0.715062
Target:  5'- -uGCACCUCCgGCCagCGCUCGggGUCGa -3'
miRNA:   3'- uuUGUGGAGG-CGG--GCGGGCagCAGCc -5'
11139 3' -60.3 NC_002794.1 + 60669 0.68 0.696084
Target:  5'- -cGCGCCgCCGCCgCcUCCGUCGaCGGg -3'
miRNA:   3'- uuUGUGGaGGCGG-GcGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 185163 0.68 0.696084
Target:  5'- -cGCGuCCUCCGCCgGCgCGgcgCgGUCGGc -3'
miRNA:   3'- uuUGU-GGAGGCGGgCGgGCa--G-CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 43001 0.67 0.752193
Target:  5'- cAGGCACCggUCCGaguagcUCCGCagGUCGUCGGc -3'
miRNA:   3'- -UUUGUGG--AGGC------GGGCGggCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 10308 0.67 0.743033
Target:  5'- cGGCGagagaCUCCGacgaCUCGgCCGUCGUCGGc -3'
miRNA:   3'- uUUGUg----GAGGC----GGGCgGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 89711 0.67 0.743033
Target:  5'- cGGCGCCgcggugCCGaUCCGCgCGgCGUCGGu -3'
miRNA:   3'- uUUGUGGa-----GGC-GGGCGgGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 18617 0.67 0.751281
Target:  5'- cGGCACCggCCGCCCcuccgacGCCCGcucCGcCGGc -3'
miRNA:   3'- uUUGUGGa-GGCGGG-------CGGGCa--GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 116896 0.67 0.743033
Target:  5'- cGGCGCCgucuccggCgGCCgGUCCGgCGUCGGc -3'
miRNA:   3'- uUUGUGGa-------GgCGGgCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 194387 0.67 0.743033
Target:  5'- -cACACCagCUGCgCCGCCCgGUCGuUCGc -3'
miRNA:   3'- uuUGUGGa-GGCG-GGCGGG-CAGC-AGCc -5'
11139 3' -60.3 NC_002794.1 + 150338 0.67 0.743033
Target:  5'- uGGACGCacggCUGUCUGCUCGUCG-CGGc -3'
miRNA:   3'- -UUUGUGga--GGCGGGCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 3976 0.67 0.737494
Target:  5'- uAGACAagaCUCCGCCUacgGaCCCGgaccacgccucuucaUCGUCGGa -3'
miRNA:   3'- -UUUGUg--GAGGCGGG---C-GGGC---------------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 63890 0.67 0.743033
Target:  5'- -uGCACCUCUuCUCGCCgGcCGUCGc -3'
miRNA:   3'- uuUGUGGAGGcGGGCGGgCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 152234 0.67 0.733786
Target:  5'- -cGCGCCacgUCGCgCGCaCCGUCGccgUCGGa -3'
miRNA:   3'- uuUGUGGa--GGCGgGCG-GGCAGC---AGCC- -5'
11139 3' -60.3 NC_002794.1 + 30544 0.67 0.752193
Target:  5'- aAGAC-CCUCggauggauccgCGCCCGCUCGuUCGUCa- -3'
miRNA:   3'- -UUUGuGGAG-----------GCGGGCGGGC-AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 76956 0.67 0.733786
Target:  5'- gAGACGCCgUCCgGCCgGCCCGcCGagcUCGa -3'
miRNA:   3'- -UUUGUGG-AGG-CGGgCGGGCaGC---AGCc -5'
11139 3' -60.3 NC_002794.1 + 123574 0.67 0.733786
Target:  5'- cGAGCGCCacggCCG-CCGCCCGUgcagCGUccCGGa -3'
miRNA:   3'- -UUUGUGGa---GGCgGGCGGGCA----GCA--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.