miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 138556 0.89 0.043178
Target:  5'- --uCGCCUCCGCCCGCuCCGUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGCGGGCG-GGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 99398 0.86 0.065082
Target:  5'- uGGCGCCgUCCGCCCGCCCGcCGUCGc -3'
miRNA:   3'- uUUGUGG-AGGCGGGCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 44440 0.8 0.152032
Target:  5'- cGACACCggCgCGCCCGCCCGgaCGUCGGc -3'
miRNA:   3'- uUUGUGGa-G-GCGGGCGGGCa-GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 193410 0.8 0.171507
Target:  5'- --uCGCCUCCGCcgccgCCGCCCGUCGUCc- -3'
miRNA:   3'- uuuGUGGAGGCG-----GGCGGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 90209 0.79 0.19318
Target:  5'- -cGCGCCUCCGCCCGCCg--CGcCGGa -3'
miRNA:   3'- uuUGUGGAGGCGGGCGGgcaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 126443 0.78 0.222319
Target:  5'- uGGGCGCCUCgGCCCuggGUCCGgcUCGUCGGg -3'
miRNA:   3'- -UUUGUGGAGgCGGG---CGGGC--AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 112607 0.76 0.272955
Target:  5'- cGAACGCCUCCaCCUGCgCGUCGUccaCGGg -3'
miRNA:   3'- -UUUGUGGAGGcGGGCGgGCAGCA---GCC- -5'
11139 3' -60.3 NC_002794.1 + 80439 0.76 0.272955
Target:  5'- --cCGCCggcggCCGCCgGCCCGUCGgCGGc -3'
miRNA:   3'- uuuGUGGa----GGCGGgCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 58033 0.76 0.298276
Target:  5'- cGAAC-CCgCCGCgCCGCCCGUcccCGUCGGc -3'
miRNA:   3'- -UUUGuGGaGGCG-GGCGGGCA---GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 115212 0.75 0.315691
Target:  5'- uAGCGCCUCCGCCUucugucggaucugGCUcuugacgacguccaCGUCGUCGGg -3'
miRNA:   3'- uUUGUGGAGGCGGG-------------CGG--------------GCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 107272 0.75 0.318437
Target:  5'- -cGCGCCgUCCGCCgccguCGcCCCGUCGUCGa -3'
miRNA:   3'- uuUGUGG-AGGCGG-----GC-GGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 50794 0.75 0.325381
Target:  5'- cGGCGCCUCC--UCGCCCGgCGUCGGg -3'
miRNA:   3'- uUUGUGGAGGcgGGCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 143750 0.75 0.325381
Target:  5'- -cGCGCCgCCGgggggcUCCGCUCGUCGUCGGu -3'
miRNA:   3'- uuUGUGGaGGC------GGGCGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 188291 0.75 0.332437
Target:  5'- aGGGCGCCgcgcgCCGgaCCCgGCCCGUCGUCGu -3'
miRNA:   3'- -UUUGUGGa----GGC--GGG-CGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 11078 0.75 0.332437
Target:  5'- --gUACg-CCGCCUGCCuCGUCGUCGGc -3'
miRNA:   3'- uuuGUGgaGGCGGGCGG-GCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 49625 0.75 0.339605
Target:  5'- cGGCGCCU-CGCCCGCCCcucuaacCGUCGGc -3'
miRNA:   3'- uUUGUGGAgGCGGGCGGGca-----GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 127809 0.74 0.346884
Target:  5'- cGACGCCgagCGagCGCCCGUCGUCGGc -3'
miRNA:   3'- uUUGUGGag-GCggGCGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 64388 0.74 0.346884
Target:  5'- -uGCGCCUCCGCCCcgGCcagagggccaCCGUCGUCa- -3'
miRNA:   3'- uuUGUGGAGGCGGG--CG----------GGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 124276 0.74 0.354274
Target:  5'- ---aGCCgCCGCgCCGUCCGUCGUCGc -3'
miRNA:   3'- uuugUGGaGGCG-GGCGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 4507 0.74 0.361774
Target:  5'- cAGACA--UCCGUCCGCCCcuagacGUCGUCGGu -3'
miRNA:   3'- -UUUGUggAGGCGGGCGGG------CAGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.