miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 46106 0.74 0.369384
Target:  5'- -cACGCCUCguucucCCCGCCCG-CGUCGGc -3'
miRNA:   3'- uuUGUGGAGgc----GGGCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 101446 0.73 0.400903
Target:  5'- gGGACGCCggCgCGCCCGCCCGaaaCGcCGGc -3'
miRNA:   3'- -UUUGUGGa-G-GCGGGCGGGCa--GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 191192 0.73 0.417292
Target:  5'- --uCGCCcggCCGCCCGCCCGcUCGcUCGc -3'
miRNA:   3'- uuuGUGGa--GGCGGGCGGGC-AGC-AGCc -5'
11139 3' -60.3 NC_002794.1 + 65759 0.73 0.434083
Target:  5'- -cGCGCCgCCG-CCGCCCGUgGUgGGg -3'
miRNA:   3'- uuUGUGGaGGCgGGCGGGCAgCAgCC- -5'
11139 3' -60.3 NC_002794.1 + 105664 0.73 0.434083
Target:  5'- cGGCGCgCUCCGCCCGgaccgCCGggaaCGUCGGa -3'
miRNA:   3'- uUUGUG-GAGGCGGGCg----GGCa---GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 152195 0.72 0.442624
Target:  5'- uGAACACggUCGCguuCCGCCCGgaggCGUCGGa -3'
miRNA:   3'- -UUUGUGgaGGCG---GGCGGGCa---GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 111647 0.72 0.442624
Target:  5'- cGGGCGCCgcggCCGCggccaCGCCCGUCGgauaCGGu -3'
miRNA:   3'- -UUUGUGGa---GGCGg----GCGGGCAGCa---GCC- -5'
11139 3' -60.3 NC_002794.1 + 184948 0.72 0.451259
Target:  5'- -cGCAgCUgCGCCgGCCCGcgcagccgcUCGUCGGg -3'
miRNA:   3'- uuUGUgGAgGCGGgCGGGC---------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 31339 0.72 0.451259
Target:  5'- cGGCGCCcgCCGUguccgCCGCCCGcUCGUCGa -3'
miRNA:   3'- uUUGUGGa-GGCG-----GGCGGGC-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 131531 0.72 0.459986
Target:  5'- cGGCGCCgggCCcgucaucacgGCCuCGCCCGUgGUCGGc -3'
miRNA:   3'- uUUGUGGa--GG----------CGG-GCGGGCAgCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 41251 0.72 0.459986
Target:  5'- --cCGCCgacgCCGgCgGCCCGUCGUCGc -3'
miRNA:   3'- uuuGUGGa---GGCgGgCGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 19525 0.72 0.468801
Target:  5'- gGAGCGCCggcgcggcgCgGCCCGCCgGU-GUCGGa -3'
miRNA:   3'- -UUUGUGGa--------GgCGGGCGGgCAgCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 79091 0.72 0.468801
Target:  5'- -cGCGCUcCCGCCCGCCCG-CG-CGa -3'
miRNA:   3'- uuUGUGGaGGCGGGCGGGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 138450 0.72 0.476808
Target:  5'- cGGCGCCUCgGCCUGCgacguggacgugaCCGucUCGUCGGc -3'
miRNA:   3'- uUUGUGGAGgCGGGCG-------------GGC--AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 72798 0.72 0.477702
Target:  5'- uAAACGCCgccCUGCCCGCuCCGUCGcccguccgaCGGa -3'
miRNA:   3'- -UUUGUGGa--GGCGGGCG-GGCAGCa--------GCC- -5'
11139 3' -60.3 NC_002794.1 + 131288 0.72 0.486686
Target:  5'- cGGCGCCgucgcUCCG-CCGCCCGUgGUCGu -3'
miRNA:   3'- uUUGUGG-----AGGCgGGCGGGCAgCAGCc -5'
11139 3' -60.3 NC_002794.1 + 186987 0.72 0.486686
Target:  5'- -cGCACCagcUCCGCCgGCUgCGUCGUCaGGu -3'
miRNA:   3'- uuUGUGG---AGGCGGgCGG-GCAGCAG-CC- -5'
11139 3' -60.3 NC_002794.1 + 61855 0.71 0.495749
Target:  5'- -cGCGCCccauggacgaCGCCgCGCgCCGUCGUCGGc -3'
miRNA:   3'- uuUGUGGag--------GCGG-GCG-GGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 73269 0.71 0.503971
Target:  5'- --cCACCUCCGCCgaccgcggcgacgCGCCCgGUC-UCGGa -3'
miRNA:   3'- uuuGUGGAGGCGG-------------GCGGG-CAGcAGCC- -5'
11139 3' -60.3 NC_002794.1 + 113261 0.71 0.504888
Target:  5'- cAGCGCgUCCGCCCGCUCGgccagcucccgCGUCu- -3'
miRNA:   3'- uUUGUGgAGGCGGGCGGGCa----------GCAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.