miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 110331 0.69 0.617875
Target:  5'- cGACGCCgcgcggggggucUCCGCCguggcgaCGCCuCGUCGUCGu -3'
miRNA:   3'- uUUGUGG------------AGGCGG-------GCGG-GCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 181151 0.69 0.618844
Target:  5'- --cCGCCUCCaGCCCGUCCGcCG-CGc -3'
miRNA:   3'- uuuGUGGAGG-CGGGCGGGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 31401 0.69 0.628539
Target:  5'- --cCGCCgcgcCCGCCgCGCCCGccgccuUCGUCGa -3'
miRNA:   3'- uuuGUGGa---GGCGG-GCGGGC------AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 84111 0.69 0.628539
Target:  5'- cGGACACCccgcgCCGCCgCGCCCGacCGcacgCGGa -3'
miRNA:   3'- -UUUGUGGa----GGCGG-GCGGGCa-GCa---GCC- -5'
11139 3' -60.3 NC_002794.1 + 123890 0.69 0.634358
Target:  5'- -uGCugCguUCCGCCCGCCCGagcugccgccucgCGcCGGa -3'
miRNA:   3'- uuUGugG--AGGCGGGCGGGCa------------GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 72369 0.69 0.64793
Target:  5'- -uGCGCgUCCGCggccCCGgCCGUCGUCu- -3'
miRNA:   3'- uuUGUGgAGGCG----GGCgGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 104016 0.69 0.657612
Target:  5'- gGAACGCCUCCGCagcgagCGUUCGcCGUCa- -3'
miRNA:   3'- -UUUGUGGAGGCGg-----GCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 181509 0.68 0.667276
Target:  5'- cGACGCUcguccacgucgUCCGUUCGCCCGcCGcCGGc -3'
miRNA:   3'- uUUGUGG-----------AGGCGGGCGGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 19357 0.68 0.667276
Target:  5'- --uCGCCgcCCGcCCCGCCCGgaUCGggCGGg -3'
miRNA:   3'- uuuGUGGa-GGC-GGGCGGGC--AGCa-GCC- -5'
11139 3' -60.3 NC_002794.1 + 101950 0.68 0.667276
Target:  5'- -uGCugCcCUGCCUGCCCGUgG-CGGc -3'
miRNA:   3'- uuUGugGaGGCGGGCGGGCAgCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 185766 0.68 0.667276
Target:  5'- cGGCGCggCCGCCCGUCacaCGUCGGc -3'
miRNA:   3'- uUUGUGgaGGCGGGCGGgcaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 183458 0.68 0.676914
Target:  5'- --cCGCCggCGCCCGCCCGcCG-CGa -3'
miRNA:   3'- uuuGUGGagGCGGGCGGGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 114747 0.68 0.676914
Target:  5'- ---aGCCggcgCCGCCCGCCgG-CGcCGGu -3'
miRNA:   3'- uuugUGGa---GGCGGGCGGgCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 107190 0.68 0.676914
Target:  5'- cGGCGCCgccgCCGCCggccuCGCCCGgcgcCGcCGGg -3'
miRNA:   3'- uUUGUGGa---GGCGG-----GCGGGCa---GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 190661 0.68 0.676914
Target:  5'- --uCACgUCgCGCCCGCCgCGcCGcCGGg -3'
miRNA:   3'- uuuGUGgAG-GCGGGCGG-GCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 115594 0.68 0.676914
Target:  5'- cGGCugCggucgacCCGCUCGCCCGgCGcCGGg -3'
miRNA:   3'- uUUGugGa------GGCGGGCGGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 115309 0.68 0.676914
Target:  5'- -uGCGCCgCCGUCCGCaCgGUCGccgCGGc -3'
miRNA:   3'- uuUGUGGaGGCGGGCG-GgCAGCa--GCC- -5'
11139 3' -60.3 NC_002794.1 + 117553 0.68 0.680761
Target:  5'- cAGCAgCUCgagccggucgugcaGCCCGCCCGUCGagUCGa -3'
miRNA:   3'- uUUGUgGAGg-------------CGGGCGGGCAGC--AGCc -5'
11139 3' -60.3 NC_002794.1 + 118296 0.68 0.686519
Target:  5'- -cGCGCCgggCGCgUCGCUCGUCGUCGu -3'
miRNA:   3'- uuUGUGGag-GCG-GGCGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 189916 0.68 0.686519
Target:  5'- -cGCGCgaCCGCCCGCUCGccCGaCGGc -3'
miRNA:   3'- uuUGUGgaGGCGGGCGGGCa-GCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.