miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 3976 0.67 0.737494
Target:  5'- uAGACAagaCUCCGCCUacgGaCCCGgaccacgccucuucaUCGUCGGa -3'
miRNA:   3'- -UUUGUg--GAGGCGGG---C-GGGC---------------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 4507 0.74 0.361774
Target:  5'- cAGACA--UCCGUCCGCCCcuagacGUCGUCGGu -3'
miRNA:   3'- -UUUGUggAGGCGGGCGGG------CAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 10308 0.67 0.743033
Target:  5'- cGGCGagagaCUCCGacgaCUCGgCCGUCGUCGGc -3'
miRNA:   3'- uUUGUg----GAGGC----GGGCgGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 11078 0.75 0.332437
Target:  5'- --gUACg-CCGCCUGCCuCGUCGUCGGc -3'
miRNA:   3'- uuuGUGgaGGCGGGCGG-GCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 11858 0.66 0.813221
Target:  5'- --cCGCCggcgacgaCCGCCCGcCCCG-CGaCGGg -3'
miRNA:   3'- uuuGUGGa-------GGCGGGC-GGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 13385 0.66 0.787805
Target:  5'- cGAGCcCCUCCGCCCcCUCGcggacUCGUCu- -3'
miRNA:   3'- -UUUGuGGAGGCGGGcGGGC-----AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 14136 0.7 0.570628
Target:  5'- cAACugUaCCGUCCgGUCCGUCGUCGa -3'
miRNA:   3'- uUUGugGaGGCGGG-CGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 16952 0.66 0.804887
Target:  5'- --cCGCCUCC-CCaCGCCCucUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGcGG-GCGGGc-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 18064 0.67 0.724459
Target:  5'- -uGCACg-CCGCCUGUCUGUgcgUGUCGGu -3'
miRNA:   3'- uuUGUGgaGGCGGGCGGGCA---GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 18617 0.67 0.751281
Target:  5'- cGGCACCggCCGCCCcuccgacGCCCGcucCGcCGGc -3'
miRNA:   3'- uUUGUGGa-GGCGGG-------CGGGCa--GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 19357 0.68 0.667276
Target:  5'- --uCGCCgcCCGcCCCGCCCGgaUCGggCGGg -3'
miRNA:   3'- uuuGUGGa-GGC-GGGCGGGC--AGCa-GCC- -5'
11139 3' -60.3 NC_002794.1 + 19525 0.72 0.468801
Target:  5'- gGAGCGCCggcgcggcgCgGCCCGCCgGU-GUCGGa -3'
miRNA:   3'- -UUUGUGGa--------GgCGGGCGGgCAgCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 19799 0.67 0.761258
Target:  5'- -cGCugCUCCGCUCGgaCCGcgCGcCGGa -3'
miRNA:   3'- uuUGugGAGGCGGGCg-GGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 26643 0.67 0.761258
Target:  5'- -cGCACCcggacggCgGCCgGCUCGUCGgCGGg -3'
miRNA:   3'- uuUGUGGa------GgCGGgCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 27401 0.66 0.821408
Target:  5'- gGAugACCgcucgaCCGgCCGCCCG-CGUCc- -3'
miRNA:   3'- -UUugUGGa-----GGCgGGCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 29195 0.7 0.561079
Target:  5'- --uCACCagUCCGUCCGUCCGgcgGUCGGc -3'
miRNA:   3'- uuuGUGG--AGGCGGGCGGGCag-CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 30544 0.67 0.752193
Target:  5'- aAGAC-CCUCggauggauccgCGCCCGCUCGuUCGUCa- -3'
miRNA:   3'- -UUUGuGGAG-----------GCGGGCGGGC-AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 31339 0.72 0.451259
Target:  5'- cGGCGCCcgCCGUguccgCCGCCCGcUCGUCGa -3'
miRNA:   3'- uUUGUGGa-GGCG-----GGCGGGC-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 31369 0.66 0.804887
Target:  5'- nGAAguCgUCCuCCUcCCCGUCGUCGGc -3'
miRNA:   3'- -UUUguGgAGGcGGGcGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 31401 0.69 0.628539
Target:  5'- --cCGCCgcgcCCGCCgCGCCCGccgccuUCGUCGa -3'
miRNA:   3'- uuuGUGGa---GGCGG-GCGGGC------AGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.