miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 34771 0.67 0.77022
Target:  5'- cGGCACggCCGCCCGCgCCagccgaGUCGGc -3'
miRNA:   3'- uUUGUGgaGGCGGGCG-GGcag---CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 34821 0.66 0.821408
Target:  5'- cGACACCacccccUCGCCgGCgCCGgagcgggCGUCGGa -3'
miRNA:   3'- uUUGUGGa-----GGCGGgCG-GGCa------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 36509 0.67 0.769328
Target:  5'- --cCACCUCgGCCagcguguCGCCCGUCGcCu- -3'
miRNA:   3'- uuuGUGGAGgCGG-------GCGGGCAGCaGcc -5'
11139 3' -60.3 NC_002794.1 + 41251 0.72 0.459986
Target:  5'- --cCGCCgacgCCGgCgGCCCGUCGUCGc -3'
miRNA:   3'- uuuGUGGa---GGCgGgCGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 41383 0.66 0.815693
Target:  5'- cGGCGCCUCCuucggcgGCCCcgauuuccccgucucGCgacuccUCGUCGUCGGg -3'
miRNA:   3'- uUUGUGGAGG-------CGGG---------------CG------GGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 41820 0.67 0.733786
Target:  5'- gAGGCGCC-CaGCagGCCCGUgGUCGGg -3'
miRNA:   3'- -UUUGUGGaGgCGggCGGGCAgCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 43001 0.67 0.752193
Target:  5'- cAGGCACCggUCCGaguagcUCCGCagGUCGUCGGc -3'
miRNA:   3'- -UUUGUGG--AGGC------GGGCGggCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 44440 0.8 0.152032
Target:  5'- cGACACCggCgCGCCCGCCCGgaCGUCGGc -3'
miRNA:   3'- uUUGUGGa-G-GCGGGCGGGCa-GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 44698 0.67 0.731927
Target:  5'- --cCACCgCCGCCCGgCCGcgaccgcggcgaCGUCGGc -3'
miRNA:   3'- uuuGUGGaGGCGGGCgGGCa-----------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 45935 0.66 0.821408
Target:  5'- -cGCGCUUCCccGCCCGgugaCCGUCucUCGGg -3'
miRNA:   3'- uuUGUGGAGG--CGGGCg---GGCAGc-AGCC- -5'
11139 3' -60.3 NC_002794.1 + 46106 0.74 0.369384
Target:  5'- -cACGCCUCguucucCCCGCCCG-CGUCGGc -3'
miRNA:   3'- uuUGUGGAGgc----GGGCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 48086 0.67 0.761258
Target:  5'- gGAGCAgCCgCCGCUCGCCgG-CGUCaGGc -3'
miRNA:   3'- -UUUGU-GGaGGCGGGCGGgCaGCAG-CC- -5'
11139 3' -60.3 NC_002794.1 + 49220 0.7 0.589838
Target:  5'- gAGGCGCCgcgCCGCCaacagGgCCGUCGaCGGg -3'
miRNA:   3'- -UUUGUGGa--GGCGGg----CgGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 49625 0.75 0.339605
Target:  5'- cGGCGCCU-CGCCCGCCCcucuaacCGUCGGc -3'
miRNA:   3'- uUUGUGGAgGCGGGCGGGca-----GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 50794 0.75 0.325381
Target:  5'- cGGCGCCUCC--UCGCCCGgCGUCGGg -3'
miRNA:   3'- uUUGUGGAGGcgGGCGGGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 51687 0.71 0.523376
Target:  5'- cGACGCCaCCGCCUGCCCGUgCuacCGGc -3'
miRNA:   3'- uUUGUGGaGGCGGGCGGGCA-Gca-GCC- -5'
11139 3' -60.3 NC_002794.1 + 52608 0.66 0.821408
Target:  5'- --cCGCCcgagaCGCCCGCCCGaccgccgccgCGUCGa -3'
miRNA:   3'- uuuGUGGag---GCGGGCGGGCa---------GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 52904 0.68 0.686519
Target:  5'- cGGCGCCgccgCCGUcgCCGCcgCCGUCGcUCGGc -3'
miRNA:   3'- uUUGUGGa---GGCG--GGCG--GGCAGC-AGCC- -5'
11139 3' -60.3 NC_002794.1 + 53230 0.66 0.779072
Target:  5'- gAAACGguccguCCUCgGCCCGCCgCGccggCGUCGc -3'
miRNA:   3'- -UUUGU------GGAGgCGGGCGG-GCa---GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 57465 0.66 0.813221
Target:  5'- -cACGCgCUgCGCCCGCUCGUCacgCGc -3'
miRNA:   3'- uuUGUG-GAgGCGGGCGGGCAGca-GCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.