miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 77561 0.66 0.82944
Target:  5'- cGAAcCGCCgacCCGCCgCGCCUucuaCGUCGGc -3'
miRNA:   3'- -UUU-GUGGa--GGCGG-GCGGGca--GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 78056 0.68 0.715062
Target:  5'- aGAACGCCcgCCG-CCGCCCGaaCGcCGGc -3'
miRNA:   3'- -UUUGUGGa-GGCgGGCGGGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 78169 0.66 0.796413
Target:  5'- cGAGCGCUcguaacCCGUCCGcCCCGcCGUaCGGu -3'
miRNA:   3'- -UUUGUGGa-----GGCGGGC-GGGCaGCA-GCC- -5'
11139 3' -60.3 NC_002794.1 + 79091 0.72 0.468801
Target:  5'- -cGCGCUcCCGCCCGCCCG-CG-CGa -3'
miRNA:   3'- uuUGUGGaGGCGGGCGGGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 80439 0.76 0.272955
Target:  5'- --cCGCCggcggCCGCCgGCCCGUCGgCGGc -3'
miRNA:   3'- uuuGUGGa----GGCGGgCGGGCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 82356 0.66 0.787805
Target:  5'- cAAGCGCCcguccucgCCGCCCGacaCCGcCG-CGGc -3'
miRNA:   3'- -UUUGUGGa-------GGCGGGCg--GGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 82888 0.71 0.504888
Target:  5'- -cGCGCCUCgCGUCCGCCuCGcCGUCc- -3'
miRNA:   3'- uuUGUGGAG-GCGGGCGG-GCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 83780 0.71 0.514098
Target:  5'- cGACGCCgCCGCCgCGUCCGcCGUCc- -3'
miRNA:   3'- uUUGUGGaGGCGG-GCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 84111 0.69 0.628539
Target:  5'- cGGACACCccgcgCCGCCgCGCCCGacCGcacgCGGa -3'
miRNA:   3'- -UUUGUGGa----GGCGG-GCGGGCa-GCa---GCC- -5'
11139 3' -60.3 NC_002794.1 + 84159 0.67 0.724459
Target:  5'- cGGCGCCUCCucucgGCCCagcgcucgGCCCGgCGcUCGGc -3'
miRNA:   3'- uUUGUGGAGG-----CGGG--------CGGGCaGC-AGCC- -5'
11139 3' -60.3 NC_002794.1 + 85470 0.67 0.752193
Target:  5'- cGGCGCC-CgGCCUccgGCCUGUCGUCu- -3'
miRNA:   3'- uUUGUGGaGgCGGG---CGGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 89711 0.67 0.743033
Target:  5'- cGGCGCCgcggugCCGaUCCGCgCGgCGUCGGu -3'
miRNA:   3'- uUUGUGGa-----GGC-GGGCGgGCaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 90209 0.79 0.19318
Target:  5'- -cGCGCCUCCGCCCGCCg--CGcCGGa -3'
miRNA:   3'- uuUGUGGAGGCGGGCGGgcaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 97688 0.66 0.787805
Target:  5'- cGGCGCCgucaaCgCGCCCGUCCG-CGUUGu -3'
miRNA:   3'- uUUGUGGa----G-GCGGGCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 99398 0.86 0.065082
Target:  5'- uGGCGCCgUCCGCCCGCCCGcCGUCGc -3'
miRNA:   3'- uUUGUGG-AGGCGGGCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 99769 0.66 0.787805
Target:  5'- ---uGCCgCCGCCCGCggugCCGgCGUCGa -3'
miRNA:   3'- uuugUGGaGGCGGGCG----GGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 101446 0.73 0.400903
Target:  5'- gGGACGCCggCgCGCCCGCCCGaaaCGcCGGc -3'
miRNA:   3'- -UUUGUGGa-G-GCGGGCGGGCa--GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 101950 0.68 0.667276
Target:  5'- -uGCugCcCUGCCUGCCCGUgG-CGGc -3'
miRNA:   3'- uuUGugGaGGCGGGCGGGCAgCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 104016 0.69 0.657612
Target:  5'- gGAACGCCUCCGCagcgagCGUUCGcCGUCa- -3'
miRNA:   3'- -UUUGUGGAGGCGg-----GCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 104618 0.66 0.779072
Target:  5'- -cGCAgCUCgGCCagcaGCUCGUUGUCGc -3'
miRNA:   3'- uuUGUgGAGgCGGg---CGGGCAGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.