miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 195463 0.67 0.757644
Target:  5'- cGACGCC-CCGCuuGCCCGgacucgcccgccgCG-CGGc -3'
miRNA:   3'- uUUGUGGaGGCGggCGGGCa------------GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 194857 0.68 0.715062
Target:  5'- -cGCACCgUCUGCCCGCgCCG-CG-CGa -3'
miRNA:   3'- uuUGUGG-AGGCGGGCG-GGCaGCaGCc -5'
11139 3' -60.3 NC_002794.1 + 194387 0.67 0.743033
Target:  5'- -cACACCagCUGCgCCGCCCgGUCGuUCGc -3'
miRNA:   3'- uuUGUGGa-GGCG-GGCGGG-CAGC-AGCc -5'
11139 3' -60.3 NC_002794.1 + 193800 0.7 0.570628
Target:  5'- cGACGCCggCGCCCGCUCGUcuggcgccgacgCGUCGcGg -3'
miRNA:   3'- uUUGUGGagGCGGGCGGGCA------------GCAGC-C- -5'
11139 3' -60.3 NC_002794.1 + 193410 0.8 0.171507
Target:  5'- --uCGCCUCCGCcgccgCCGCCCGUCGUCc- -3'
miRNA:   3'- uuuGUGGAGGCG-----GGCGGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 191192 0.73 0.417292
Target:  5'- --uCGCCcggCCGCCCGCCCGcUCGcUCGc -3'
miRNA:   3'- uuuGUGGa--GGCGGGCGGGC-AGC-AGCc -5'
11139 3' -60.3 NC_002794.1 + 190661 0.68 0.676914
Target:  5'- --uCACgUCgCGCCCGCCgCGcCGcCGGg -3'
miRNA:   3'- uuuGUGgAG-GCGGGCGG-GCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 189916 0.68 0.686519
Target:  5'- -cGCGCgaCCGCCCGCUCGccCGaCGGc -3'
miRNA:   3'- uuUGUGgaGGCGGGCGGGCa-GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 189591 0.67 0.77022
Target:  5'- cGGCGCCccuuagcccgUCCGCCCGagaCCCGcCGacUCGGc -3'
miRNA:   3'- uUUGUGG----------AGGCGGGC---GGGCaGC--AGCC- -5'
11139 3' -60.3 NC_002794.1 + 188346 0.7 0.589838
Target:  5'- cGGCGCCgUCgCGCCCGUCCGgccggCGgCGGc -3'
miRNA:   3'- uUUGUGG-AG-GCGGGCGGGCa----GCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 188291 0.75 0.332437
Target:  5'- aGGGCGCCgcgcgCCGgaCCCgGCCCGUCGUCGu -3'
miRNA:   3'- -UUUGUGGa----GGC--GGG-CGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 187555 0.67 0.761258
Target:  5'- --cCACCgCCGCCgucggGCCCGUacccgcCGUCGGc -3'
miRNA:   3'- uuuGUGGaGGCGGg----CGGGCA------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 186987 0.72 0.486686
Target:  5'- -cGCACCagcUCCGCCgGCUgCGUCGUCaGGu -3'
miRNA:   3'- uuUGUGG---AGGCGGgCGG-GCAGCAG-CC- -5'
11139 3' -60.3 NC_002794.1 + 185766 0.68 0.667276
Target:  5'- cGGCGCggCCGCCCGUCacaCGUCGGc -3'
miRNA:   3'- uUUGUGgaGGCGGGCGGgcaGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 185163 0.68 0.696084
Target:  5'- -cGCGuCCUCCGCCgGCgCGgcgCgGUCGGc -3'
miRNA:   3'- uuUGU-GGAGGCGGgCGgGCa--G-CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 184948 0.72 0.451259
Target:  5'- -cGCAgCUgCGCCgGCCCGcgcagccgcUCGUCGGg -3'
miRNA:   3'- uuUGUgGAgGCGGgCGGGC---------AGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 184560 0.7 0.551574
Target:  5'- cGGACGCCUCaCGCgCCGCCgCGgCGgCGGc -3'
miRNA:   3'- -UUUGUGGAG-GCG-GGCGG-GCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 184114 0.7 0.599487
Target:  5'- cAGCGCC-CCGCUCGCCgG-CGUCa- -3'
miRNA:   3'- uUUGUGGaGGCGGGCGGgCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 183736 0.71 0.510406
Target:  5'- -cGCGCCcagcaggaucaggCCGCCCGCCacgaagaaCGUCGUCGa -3'
miRNA:   3'- uuUGUGGa------------GGCGGGCGG--------GCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 183536 0.67 0.77022
Target:  5'- -cGCGCC-CCGUCCGCCCGgggacacugcgCGcCGa -3'
miRNA:   3'- uuUGUGGaGGCGGGCGGGCa----------GCaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.