miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 27401 0.66 0.821408
Target:  5'- gGAugACCgcucgaCCGgCCGCCCG-CGUCc- -3'
miRNA:   3'- -UUugUGGa-----GGCgGGCGGGCaGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 124141 0.66 0.821408
Target:  5'- cGGCGCCcgggagcggucUCCGCgggGCCCGggagagCGUCGGg -3'
miRNA:   3'- uUUGUGG-----------AGGCGgg-CGGGCa-----GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 76589 0.66 0.82944
Target:  5'- -cGCACCcgcucUUCGaCCCGCCgGgUCGUCGu -3'
miRNA:   3'- uuUGUGG-----AGGC-GGGCGGgC-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 112010 0.66 0.82944
Target:  5'- --uCACCagUCgGCgCCGCCCGaaggCGUCGa -3'
miRNA:   3'- uuuGUGG--AGgCG-GGCGGGCa---GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 77561 0.66 0.82944
Target:  5'- cGAAcCGCCgacCCGCCgCGCCUucuaCGUCGGc -3'
miRNA:   3'- -UUU-GUGGa--GGCGG-GCGGGca--GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 11858 0.66 0.813221
Target:  5'- --cCGCCggcgacgaCCGCCCGcCCCG-CGaCGGg -3'
miRNA:   3'- uuuGUGGa-------GGCGGGC-GGGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 57465 0.66 0.813221
Target:  5'- -cACGCgCUgCGCCCGCUCGUCacgCGc -3'
miRNA:   3'- uuUGUG-GAgGCGGGCGGGCAGca-GCc -5'
11139 3' -60.3 NC_002794.1 + 97688 0.66 0.787805
Target:  5'- cGGCGCCgucaaCgCGCCCGUCCG-CGUUGu -3'
miRNA:   3'- uUUGUGGa----G-GCGGGCGGGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 82356 0.66 0.787805
Target:  5'- cAAGCGCCcguccucgCCGCCCGacaCCGcCG-CGGc -3'
miRNA:   3'- -UUUGUGGa-------GGCGGGCg--GGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 13385 0.66 0.787805
Target:  5'- cGAGCcCCUCCGCCCcCUCGcggacUCGUCu- -3'
miRNA:   3'- -UUUGuGGAGGCGGGcGGGC-----AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 117367 0.66 0.787805
Target:  5'- gGAGCGgCgggCCGCCUGCaCgGUCG-CGGc -3'
miRNA:   3'- -UUUGUgGa--GGCGGGCG-GgCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 74466 0.66 0.791264
Target:  5'- -uACACCagcugcucaagagguUCCGCCCGaCCCGaC-UCGGc -3'
miRNA:   3'- uuUGUGG---------------AGGCGGGC-GGGCaGcAGCC- -5'
11139 3' -60.3 NC_002794.1 + 127167 0.66 0.796413
Target:  5'- --cCACCUCCaccCUCGCCgcaGUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGc--GGGCGGg--CAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 78169 0.66 0.796413
Target:  5'- cGAGCGCUcguaacCCGUCCGcCCCGcCGUaCGGu -3'
miRNA:   3'- -UUUGUGGa-----GGCGGGC-GGGCaGCA-GCC- -5'
11139 3' -60.3 NC_002794.1 + 16952 0.66 0.804887
Target:  5'- --cCGCCUCC-CCaCGCCCucUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGcGG-GCGGGc-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 31369 0.66 0.804887
Target:  5'- nGAAguCgUCCuCCUcCCCGUCGUCGGc -3'
miRNA:   3'- -UUUguGgAGGcGGGcGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 119612 0.66 0.804887
Target:  5'- cAGCGCCUCgaggaaCGUCuCGgCCGUCGUCa- -3'
miRNA:   3'- uUUGUGGAG------GCGG-GCgGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 133356 0.66 0.804887
Target:  5'- --uCGCCUCuugcuuuuCGCUCGUCgGUCGUCGu -3'
miRNA:   3'- uuuGUGGAG--------GCGGGCGGgCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 124443 0.66 0.813221
Target:  5'- -cGCGCgUCCucgcuuuCUCGUUCGUCGUCGGc -3'
miRNA:   3'- uuUGUGgAGGc------GGGCGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 110539 0.66 0.804887
Target:  5'- aGAACGCggcgacgacgugCUCCGCgUCGUcgCCGUCGUCGa -3'
miRNA:   3'- -UUUGUG------------GAGGCG-GGCG--GGCAGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.