miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11139 3' -60.3 NC_002794.1 + 119612 0.66 0.804887
Target:  5'- cAGCGCCUCgaggaaCGUCuCGgCCGUCGUCa- -3'
miRNA:   3'- uUUGUGGAG------GCGG-GCgGGCAGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 31369 0.66 0.804887
Target:  5'- nGAAguCgUCCuCCUcCCCGUCGUCGGc -3'
miRNA:   3'- -UUUguGgAGGcGGGcGGGCAGCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 109705 0.66 0.779072
Target:  5'- cAGC-CCgcCCGCCCGCCCGUuucuucaccgaUGUCa- -3'
miRNA:   3'- uUUGuGGa-GGCGGGCGGGCA-----------GCAGcc -5'
11139 3' -60.3 NC_002794.1 + 145534 0.66 0.779072
Target:  5'- cGAGCGCCUCgggCGCCCcgagcgGCCCGaccgguUCG-CGGa -3'
miRNA:   3'- -UUUGUGGAG---GCGGG------CGGGC------AGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 53230 0.66 0.779072
Target:  5'- gAAACGguccguCCUCgGCCCGCCgCGccggCGUCGc -3'
miRNA:   3'- -UUUGU------GGAGgCGGGCGG-GCa---GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 65276 0.67 0.77022
Target:  5'- cGGCGCCUCCucGCCC-CCCucggCGUCGu -3'
miRNA:   3'- uUUGUGGAGG--CGGGcGGGca--GCAGCc -5'
11139 3' -60.3 NC_002794.1 + 189591 0.67 0.77022
Target:  5'- cGGCGCCccuuagcccgUCCGCCCGagaCCCGcCGacUCGGc -3'
miRNA:   3'- uUUGUGG----------AGGCGGGC---GGGCaGC--AGCC- -5'
11139 3' -60.3 NC_002794.1 + 104618 0.66 0.779072
Target:  5'- -cGCAgCUCgGCCagcaGCUCGUUGUCGc -3'
miRNA:   3'- uuUGUgGAGgCGGg---CGGGCAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 109503 0.66 0.779072
Target:  5'- uGAugACguuggUCCGCCCgGCCCGcgcucguucggCGUCGGg -3'
miRNA:   3'- -UUugUGg----AGGCGGG-CGGGCa----------GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 34771 0.67 0.77022
Target:  5'- cGGCACggCCGCCCGCgCCagccgaGUCGGc -3'
miRNA:   3'- uUUGUGgaGGCGGGCG-GGcag---CAGCC- -5'
11139 3' -60.3 NC_002794.1 + 107363 0.66 0.779072
Target:  5'- cGAGCGaucuCCUCCGUCgUGCUCGcggcCGUCGGg -3'
miRNA:   3'- -UUUGU----GGAGGCGG-GCGGGCa---GCAGCC- -5'
11139 3' -60.3 NC_002794.1 + 99769 0.66 0.787805
Target:  5'- ---uGCCgCCGCCCGCggugCCGgCGUCGa -3'
miRNA:   3'- uuugUGGaGGCGGGCG----GGCaGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 16952 0.66 0.804887
Target:  5'- --cCGCCUCC-CCaCGCCCucUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGcGG-GCGGGc-AGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 78169 0.66 0.796413
Target:  5'- cGAGCGCUcguaacCCGUCCGcCCCGcCGUaCGGu -3'
miRNA:   3'- -UUUGUGGa-----GGCGGGC-GGGCaGCA-GCC- -5'
11139 3' -60.3 NC_002794.1 + 127167 0.66 0.796413
Target:  5'- --cCACCUCCaccCUCGCCgcaGUCGUCGc -3'
miRNA:   3'- uuuGUGGAGGc--GGGCGGg--CAGCAGCc -5'
11139 3' -60.3 NC_002794.1 + 74466 0.66 0.791264
Target:  5'- -uACACCagcugcucaagagguUCCGCCCGaCCCGaC-UCGGc -3'
miRNA:   3'- uuUGUGG---------------AGGCGGGC-GGGCaGcAGCC- -5'
11139 3' -60.3 NC_002794.1 + 117367 0.66 0.787805
Target:  5'- gGAGCGgCgggCCGCCUGCaCgGUCG-CGGc -3'
miRNA:   3'- -UUUGUgGa--GGCGGGCG-GgCAGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 13385 0.66 0.787805
Target:  5'- cGAGCcCCUCCGCCCcCUCGcggacUCGUCu- -3'
miRNA:   3'- -UUUGuGGAGGCGGGcGGGC-----AGCAGcc -5'
11139 3' -60.3 NC_002794.1 + 82356 0.66 0.787805
Target:  5'- cAAGCGCCcguccucgCCGCCCGacaCCGcCG-CGGc -3'
miRNA:   3'- -UUUGUGGa-------GGCGGGCg--GGCaGCaGCC- -5'
11139 3' -60.3 NC_002794.1 + 97688 0.66 0.787805
Target:  5'- cGGCGCCgucaaCgCGCCCGUCCG-CGUUGu -3'
miRNA:   3'- uUUGUGGa----G-GCGGGCGGGCaGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.