miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 3' -61.1 NC_002794.1 + 110355 0.66 0.781001
Target:  5'- cGUGGcGaCGCCUcgucgucgucggcucUCgGCCgCUCCUCGUCc -3'
miRNA:   3'- -CGCCaCgGCGGA---------------AG-CGG-GAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 138290 0.66 0.777483
Target:  5'- aGCGGgugGCgGCCUUgGCCCgcaCgcuGUCg -3'
miRNA:   3'- -CGCCa--CGgCGGAAgCGGGag-Gag-CAG- -5'
11140 3' -61.1 NC_002794.1 + 105726 0.66 0.775716
Target:  5'- cGCGGcgGCCGUCgggaaagcgucgUCGCCgUCgUCGcCg -3'
miRNA:   3'- -CGCCa-CGGCGGa-----------AGCGGgAGgAGCaG- -5'
11140 3' -61.1 NC_002794.1 + 49162 0.66 0.774831
Target:  5'- aGCGG-GCCGuCCgggaggccgagcccaCGgCCUUCUCGUCc -3'
miRNA:   3'- -CGCCaCGGC-GGaa-------------GCgGGAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 147012 0.66 0.768604
Target:  5'- gGCGGcgGCCGCCggCGCUCggUCUaaggacgaagcCGUCg -3'
miRNA:   3'- -CGCCa-CGGCGGaaGCGGGa-GGA-----------GCAG- -5'
11140 3' -61.1 NC_002794.1 + 63340 0.66 0.768604
Target:  5'- cGCGGaccgGUCGC--UCGCCCUCUcgcuccCGUCg -3'
miRNA:   3'- -CGCCa---CGGCGgaAGCGGGAGGa-----GCAG- -5'
11140 3' -61.1 NC_002794.1 + 106670 0.66 0.763224
Target:  5'- gGCGGUGUCGCUgugcugcuacguaCGCCCgCCg-GUCa -3'
miRNA:   3'- -CGCCACGGCGGaa-----------GCGGGaGGagCAG- -5'
11140 3' -61.1 NC_002794.1 + 65854 0.66 0.763224
Target:  5'- cCGGaGCCGCUagauuuuccguucuuUUCGCUCUCUccgcuccuUCGUCg -3'
miRNA:   3'- cGCCaCGGCGG---------------AAGCGGGAGG--------AGCAG- -5'
11140 3' -61.1 NC_002794.1 + 99543 0.66 0.763224
Target:  5'- uGCGG-GCCGCggaaaccgcgcgCGCCCUCCgCGg- -3'
miRNA:   3'- -CGCCaCGGCGgaa---------GCGGGAGGaGCag -5'
11140 3' -61.1 NC_002794.1 + 189136 0.66 0.750527
Target:  5'- uGCGGgGCCGCCagCGCCagacuCUCCcgCGg- -3'
miRNA:   3'- -CGCCaCGGCGGaaGCGG-----GAGGa-GCag -5'
11140 3' -61.1 NC_002794.1 + 80462 0.66 0.750527
Target:  5'- gGCGGcccGCUGCC--CGUCUUCCgCGUCg -3'
miRNA:   3'- -CGCCa--CGGCGGaaGCGGGAGGaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 50734 0.66 0.750527
Target:  5'- cCGGggcgGCCGCC-UCGa-CUCgCUCGUCc -3'
miRNA:   3'- cGCCa---CGGCGGaAGCggGAG-GAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 186294 0.66 0.750527
Target:  5'- cGCGGccagGCgGCCggUCGCCgCggcgCgCUCGUCc -3'
miRNA:   3'- -CGCCa---CGgCGGa-AGCGG-Ga---G-GAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 78014 0.66 0.745028
Target:  5'- gGCGGcGCCgucgggagaacgcccGCCgcCGCCCUCgC-CGUCa -3'
miRNA:   3'- -CGCCaCGG---------------CGGaaGCGGGAG-GaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 189970 0.66 0.741345
Target:  5'- aCGG-GCCGCCcgcUCGCCCgacggUC-CGUCc -3'
miRNA:   3'- cGCCaCGGCGGa--AGCGGGa----GGaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 41673 0.67 0.72273
Target:  5'- uCGG-GCCGCCgcaggagCGCCCggaccgCCggaUCGUCc -3'
miRNA:   3'- cGCCaCGGCGGaa-----GCGGGa-----GG---AGCAG- -5'
11140 3' -61.1 NC_002794.1 + 53422 0.67 0.713314
Target:  5'- aGCGGc-CCGCuCUcgcUCGCCCUCC-CGcUCu -3'
miRNA:   3'- -CGCCacGGCG-GA---AGCGGGAGGaGC-AG- -5'
11140 3' -61.1 NC_002794.1 + 60222 0.67 0.713314
Target:  5'- cGCGacGCCGCCgagcgCGCCCUCUaCGa- -3'
miRNA:   3'- -CGCcaCGGCGGaa---GCGGGAGGaGCag -5'
11140 3' -61.1 NC_002794.1 + 184530 0.67 0.713314
Target:  5'- cGCGGgcgacGCCGCCcacCGCCgcCUCUUCGg- -3'
miRNA:   3'- -CGCCa----CGGCGGaa-GCGG--GAGGAGCag -5'
11140 3' -61.1 NC_002794.1 + 138877 0.67 0.703835
Target:  5'- cGCGGgagucGUCGCUcUCGCCUUCUUCa-- -3'
miRNA:   3'- -CGCCa----CGGCGGaAGCGGGAGGAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.