Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11140 | 3' | -61.1 | NC_002794.1 | + | 110355 | 0.66 | 0.781001 |
Target: 5'- cGUGGcGaCGCCUcgucgucgucggcucUCgGCCgCUCCUCGUCc -3' miRNA: 3'- -CGCCaCgGCGGA---------------AG-CGG-GAGGAGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 189970 | 0.66 | 0.741345 |
Target: 5'- aCGG-GCCGCCcgcUCGCCCgacggUC-CGUCc -3' miRNA: 3'- cGCCaCGGCGGa--AGCGGGa----GGaGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 78014 | 0.66 | 0.745028 |
Target: 5'- gGCGGcGCCgucgggagaacgcccGCCgcCGCCCUCgC-CGUCa -3' miRNA: 3'- -CGCCaCGG---------------CGGaaGCGGGAG-GaGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 189136 | 0.66 | 0.750527 |
Target: 5'- uGCGGgGCCGCCagCGCCagacuCUCCcgCGg- -3' miRNA: 3'- -CGCCaCGGCGGaaGCGG-----GAGGa-GCag -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 80462 | 0.66 | 0.750527 |
Target: 5'- gGCGGcccGCUGCC--CGUCUUCCgCGUCg -3' miRNA: 3'- -CGCCa--CGGCGGaaGCGGGAGGaGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 50734 | 0.66 | 0.750527 |
Target: 5'- cCGGggcgGCCGCC-UCGa-CUCgCUCGUCc -3' miRNA: 3'- cGCCa---CGGCGGaAGCggGAG-GAGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 186294 | 0.66 | 0.750527 |
Target: 5'- cGCGGccagGCgGCCggUCGCCgCggcgCgCUCGUCc -3' miRNA: 3'- -CGCCa---CGgCGGa-AGCGG-Ga---G-GAGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 99543 | 0.66 | 0.763224 |
Target: 5'- uGCGG-GCCGCggaaaccgcgcgCGCCCUCCgCGg- -3' miRNA: 3'- -CGCCaCGGCGgaa---------GCGGGAGGaGCag -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 65854 | 0.66 | 0.763224 |
Target: 5'- cCGGaGCCGCUagauuuuccguucuuUUCGCUCUCUccgcuccuUCGUCg -3' miRNA: 3'- cGCCaCGGCGG---------------AAGCGGGAGG--------AGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 138290 | 0.66 | 0.777483 |
Target: 5'- aGCGGgugGCgGCCUUgGCCCgcaCgcuGUCg -3' miRNA: 3'- -CGCCa--CGgCGGAAgCGGGag-Gag-CAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 105726 | 0.66 | 0.775716 |
Target: 5'- cGCGGcgGCCGUCgggaaagcgucgUCGCCgUCgUCGcCg -3' miRNA: 3'- -CGCCa-CGGCGGa-----------AGCGGgAGgAGCaG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 63340 | 0.66 | 0.768604 |
Target: 5'- cGCGGaccgGUCGC--UCGCCCUCUcgcuccCGUCg -3' miRNA: 3'- -CGCCa---CGGCGgaAGCGGGAGGa-----GCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 49162 | 0.66 | 0.774831 |
Target: 5'- aGCGG-GCCGuCCgggaggccgagcccaCGgCCUUCUCGUCc -3' miRNA: 3'- -CGCCaCGGC-GGaa-------------GCgGGAGGAGCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 147012 | 0.66 | 0.768604 |
Target: 5'- gGCGGcgGCCGCCggCGCUCggUCUaaggacgaagcCGUCg -3' miRNA: 3'- -CGCCa-CGGCGGaaGCGGGa-GGA-----------GCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 106670 | 0.66 | 0.763224 |
Target: 5'- gGCGGUGUCGCUgugcugcuacguaCGCCCgCCg-GUCa -3' miRNA: 3'- -CGCCACGGCGGaa-----------GCGGGaGGagCAG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 184530 | 0.67 | 0.713314 |
Target: 5'- cGCGGgcgacGCCGCCcacCGCCgcCUCUUCGg- -3' miRNA: 3'- -CGCCa----CGGCGGaa-GCGG--GAGGAGCag -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 60222 | 0.67 | 0.713314 |
Target: 5'- cGCGacGCCGCCgagcgCGCCCUCUaCGa- -3' miRNA: 3'- -CGCcaCGGCGGaa---GCGGGAGGaGCag -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 53422 | 0.67 | 0.713314 |
Target: 5'- aGCGGc-CCGCuCUcgcUCGCCCUCC-CGcUCu -3' miRNA: 3'- -CGCCacGGCG-GA---AGCGGGAGGaGC-AG- -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 138877 | 0.67 | 0.703835 |
Target: 5'- cGCGGgagucGUCGCUcUCGCCUUCUUCa-- -3' miRNA: 3'- -CGCCa----CGGCGGaAGCGGGAGGAGcag -5' |
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11140 | 3' | -61.1 | NC_002794.1 | + | 99394 | 0.67 | 0.694303 |
Target: 5'- aUGGUGgCGCCgucCGCCCgCCcgcCGUCg -3' miRNA: 3'- cGCCACgGCGGaa-GCGGGaGGa--GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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