miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 3' -61.1 NC_002794.1 + 69065 0.8 0.147527
Target:  5'- aCGGgccGCCGCCggcCGCCCUCCUcCGUCc -3'
miRNA:   3'- cGCCa--CGGCGGaa-GCGGGAGGA-GCAG- -5'
11140 3' -61.1 NC_002794.1 + 71811 0.77 0.221152
Target:  5'- cGCGGcgagGCCGCCUcgucgcgaggaUCGCCgUCCcCGUCg -3'
miRNA:   3'- -CGCCa---CGGCGGA-----------AGCGGgAGGaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 75384 0.77 0.221152
Target:  5'- gGCGGcgGCgGCCUcucccCGuCCCUCCUCGUCc -3'
miRNA:   3'- -CGCCa-CGgCGGAa----GC-GGGAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 150497 0.76 0.231627
Target:  5'- uGCGGcGCCGCCUccucccccUCcCCCUCCUCGg- -3'
miRNA:   3'- -CGCCaCGGCGGA--------AGcGGGAGGAGCag -5'
11140 3' -61.1 NC_002794.1 + 147986 0.74 0.330204
Target:  5'- gGCGGUGUCccugcugGCCUUCGUCCgcgucggCCUCGgUCg -3'
miRNA:   3'- -CGCCACGG-------CGGAAGCGGGa------GGAGC-AG- -5'
11140 3' -61.1 NC_002794.1 + 65271 0.74 0.330913
Target:  5'- aGCGGcGgCGCCUccUCGCCCcCCUCGg- -3'
miRNA:   3'- -CGCCaCgGCGGA--AGCGGGaGGAGCag -5'
11140 3' -61.1 NC_002794.1 + 55668 0.74 0.338061
Target:  5'- aUGGUGCgCGCCUUCuGCCCguggaaggCCUCGa- -3'
miRNA:   3'- cGCCACG-GCGGAAG-CGGGa-------GGAGCag -5'
11140 3' -61.1 NC_002794.1 + 187902 0.73 0.368533
Target:  5'- cGCGGUGCCGC--UCGCCCgCCgggccccgccgcgacCGUCg -3'
miRNA:   3'- -CGCCACGGCGgaAGCGGGaGGa--------------GCAG- -5'
11140 3' -61.1 NC_002794.1 + 52902 0.73 0.383279
Target:  5'- cGCGGcGCCGCCgccgUCGCCg-CCgcCGUCg -3'
miRNA:   3'- -CGCCaCGGCGGa---AGCGGgaGGa-GCAG- -5'
11140 3' -61.1 NC_002794.1 + 107264 0.72 0.412271
Target:  5'- gGCGGagccgcgccguccGCCGCCgUCGCCC-CgUCGUCg -3'
miRNA:   3'- -CGCCa------------CGGCGGaAGCGGGaGgAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 186079 0.72 0.423907
Target:  5'- cCGccGCCGCCUUCGCCgggcgCUUCGUCg -3'
miRNA:   3'- cGCcaCGGCGGAAGCGGga---GGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 191683 0.72 0.432337
Target:  5'- gGCGGcgGCgUGCCcucgUCGCggaccaCCUCCUCGUCg -3'
miRNA:   3'- -CGCCa-CG-GCGGa---AGCG------GGAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 40353 0.72 0.440864
Target:  5'- gGCGGcGCCGCCUcUCG-UCUCCUCuUCa -3'
miRNA:   3'- -CGCCaCGGCGGA-AGCgGGAGGAGcAG- -5'
11140 3' -61.1 NC_002794.1 + 11816 0.71 0.449486
Target:  5'- cGCcGUcGCCGCCUUCGCUCccccCCUCGcCg -3'
miRNA:   3'- -CGcCA-CGGCGGAAGCGGGa---GGAGCaG- -5'
11140 3' -61.1 NC_002794.1 + 124258 0.71 0.452961
Target:  5'- cGCGGguagucgccggccaGCCGCCg-CGCCgUCCgUCGUCg -3'
miRNA:   3'- -CGCCa-------------CGGCGGaaGCGGgAGG-AGCAG- -5'
11140 3' -61.1 NC_002794.1 + 77011 0.71 0.475894
Target:  5'- cCGGgaUGCCGCCggCGCaCCUCgaccgCUCGUCc -3'
miRNA:   3'- cGCC--ACGGCGGaaGCG-GGAG-----GAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 156850 0.7 0.503968
Target:  5'- uCGGUGCCGCgCguucccgcucgaggCGCCUUCgaCUCGUCa -3'
miRNA:   3'- cGCCACGGCG-Gaa------------GCGGGAG--GAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 146356 0.7 0.512254
Target:  5'- cGCGGcgGCCGCCcggguaGCCgUCCgcUCGUCc -3'
miRNA:   3'- -CGCCa-CGGCGGaag---CGGgAGG--AGCAG- -5'
11140 3' -61.1 NC_002794.1 + 146239 0.7 0.521525
Target:  5'- cGCGGcGUCGUCaucgUCGUCgaCCUCGUCg -3'
miRNA:   3'- -CGCCaCGGCGGa---AGCGGgaGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 117372 0.7 0.530861
Target:  5'- gGCGG-GCCGCCUgcacggUCGCggcgaagcgggCCUCCacCGUCg -3'
miRNA:   3'- -CGCCaCGGCGGA------AGCG-----------GGAGGa-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.