miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 3' -61.1 NC_002794.1 + 8215 0.67 0.694303
Target:  5'- uGCGG-GCC-CCgucccccUCGUCCucgUCCUCGUCc -3'
miRNA:   3'- -CGCCaCGGcGGa------AGCGGG---AGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 78870 0.67 0.694303
Target:  5'- uCGGagcucaGCCGCC-UCGaCCUCCUCGg- -3'
miRNA:   3'- cGCCa-----CGGCGGaAGCgGGAGGAGCag -5'
11140 3' -61.1 NC_002794.1 + 143559 0.67 0.694303
Target:  5'- aCGGUgGCCcaGCCgugcgCGCCgUCCUCGg- -3'
miRNA:   3'- cGCCA-CGG--CGGaa---GCGGgAGGAGCag -5'
11140 3' -61.1 NC_002794.1 + 99394 0.67 0.694303
Target:  5'- aUGGUGgCGCCgucCGCCCgCCcgcCGUCg -3'
miRNA:   3'- cGCCACgGCGGaa-GCGGGaGGa--GCAG- -5'
11140 3' -61.1 NC_002794.1 + 188410 0.67 0.684723
Target:  5'- aCGGgaccGCCGCCgcaacUGCCgCaggUCCUCGUCg -3'
miRNA:   3'- cGCCa---CGGCGGaa---GCGG-G---AGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 63478 0.67 0.684723
Target:  5'- gGCGGcgGCCGCCgucgacgaCGCCgCggCgUCGUCg -3'
miRNA:   3'- -CGCCa-CGGCGGaa------GCGG-Ga-GgAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 62507 0.67 0.684723
Target:  5'- gGCGGcGCCGCCggCGCC-UCCgcccacCGUg -3'
miRNA:   3'- -CGCCaCGGCGGaaGCGGgAGGa-----GCAg -5'
11140 3' -61.1 NC_002794.1 + 82878 0.67 0.675104
Target:  5'- cGCGaccGUGCgCGCCUcgCGUCCgCCUCGcCg -3'
miRNA:   3'- -CGC---CACG-GCGGAa-GCGGGaGGAGCaG- -5'
11140 3' -61.1 NC_002794.1 + 188310 0.67 0.675104
Target:  5'- cCGGc-CCGUCgUCGUCgUCCUCGUCg -3'
miRNA:   3'- cGCCacGGCGGaAGCGGgAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 109447 0.67 0.675104
Target:  5'- cGgGGUcGcCCGCCcUCGCcuCCUCUUUGUCu -3'
miRNA:   3'- -CgCCA-C-GGCGGaAGCG--GGAGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 90201 0.67 0.675104
Target:  5'- aCGGUGCCcgcGCCUcCGCCCgCCgCGcCg -3'
miRNA:   3'- cGCCACGG---CGGAaGCGGGaGGaGCaG- -5'
11140 3' -61.1 NC_002794.1 + 90875 0.68 0.669317
Target:  5'- uGUGGccgGCCGCCUUCGUgUUCCauaacgccgaggccaUCGUg -3'
miRNA:   3'- -CGCCa--CGGCGGAAGCGgGAGG---------------AGCAg -5'
11140 3' -61.1 NC_002794.1 + 148523 0.68 0.665454
Target:  5'- aGCGGcugcGCCGCUU---CCCgugCCUCGUCg -3'
miRNA:   3'- -CGCCa---CGGCGGAagcGGGa--GGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 107189 0.68 0.65578
Target:  5'- cCGGcGCCGCCgcCGCCggCCUCGcCc -3'
miRNA:   3'- cGCCaCGGCGGaaGCGGgaGGAGCaG- -5'
11140 3' -61.1 NC_002794.1 + 31394 0.68 0.65578
Target:  5'- gGCGGccCCGCCgcgcccgccgCGCCCgccgCCUuCGUCg -3'
miRNA:   3'- -CGCCacGGCGGaa--------GCGGGa---GGA-GCAG- -5'
11140 3' -61.1 NC_002794.1 + 97681 0.68 0.65578
Target:  5'- aGCGGUucggcGCCGUCaacgCGCCCgUCCgCGUUg -3'
miRNA:   3'- -CGCCA-----CGGCGGaa--GCGGG-AGGaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 41381 0.68 0.652874
Target:  5'- cGCGGcGCCuCCUUCGgcggccccgauuucCCCgucucgcgacUCCUCGUCg -3'
miRNA:   3'- -CGCCaCGGcGGAAGC--------------GGG----------AGGAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 186802 0.68 0.646088
Target:  5'- cGCGGUa-CGCCUcCGCCgUCaUCGUCa -3'
miRNA:   3'- -CGCCAcgGCGGAaGCGGgAGgAGCAG- -5'
11140 3' -61.1 NC_002794.1 + 80429 0.68 0.636387
Target:  5'- gGCGGggccGCCGCCggCGgCCgccggCC-CGUCg -3'
miRNA:   3'- -CGCCa---CGGCGGaaGCgGGa----GGaGCAG- -5'
11140 3' -61.1 NC_002794.1 + 130276 0.68 0.636387
Target:  5'- aGCGGUugaGCCGCCgcUCGCUC-CCggGUCc -3'
miRNA:   3'- -CGCCA---CGGCGGa-AGCGGGaGGagCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.