miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 127693 0.66 0.950077
Target:  5'- cGGGGCGAcguGGGUGggacAGGAGaACGAUGGg -3'
miRNA:   3'- -UCCUGCU---CCUAC----UCCUCcUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 146748 0.66 0.950077
Target:  5'- cGGGcCGcGGAUcgGGGGAGGgACGAUGGu -3'
miRNA:   3'- -UCCuGCuCCUA--CUCCUCC-UGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 95551 0.66 0.950077
Target:  5'- --aGCGAGGcgcagcUGGGcGAGGACGAgCGGCu -3'
miRNA:   3'- uccUGCUCCu-----ACUC-CUCCUGCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 37882 0.66 0.945903
Target:  5'- cGGGCGGcGGggGcGGuGG-CGGCGGCa -3'
miRNA:   3'- uCCUGCU-CCuaCuCCuCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 149601 0.66 0.945903
Target:  5'- uGGAcCGAGGAgcccccGAcGGGGACGugGgACg -3'
miRNA:   3'- uCCU-GCUCCUa-----CUcCUCCUGCugC-UG- -5'
11140 5' -56.1 NC_002794.1 + 120794 0.66 0.945473
Target:  5'- -cGGCGAGGGUGAcguuuuuGGAGcGGCagcuGCGACa -3'
miRNA:   3'- ucCUGCUCCUACU-------CCUC-CUGc---UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 142226 0.66 0.941505
Target:  5'- cGGuGCGGGGAgcgGcGGAGG-CGGCGGu -3'
miRNA:   3'- uCC-UGCUCCUa--CuCCUCCuGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 99365 0.66 0.941505
Target:  5'- uGGACGAaGAgaagcGGGAGGugcCGACGAUg -3'
miRNA:   3'- uCCUGCUcCUac---UCCUCCu--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 207 0.66 0.941505
Target:  5'- cGGcCGGGGG-GAGGGGGuccaGACGGg -3'
miRNA:   3'- uCCuGCUCCUaCUCCUCCug--CUGCUg -5'
11140 5' -56.1 NC_002794.1 + 109223 0.66 0.941505
Target:  5'- aAGGACaAGGAcaagGAGaAGGACGAgGAg -3'
miRNA:   3'- -UCCUGcUCCUa---CUCcUCCUGCUgCUg -5'
11140 5' -56.1 NC_002794.1 + 145709 0.66 0.936882
Target:  5'- gAGGccgaaaACGGGGAUcGGgcgcuGGAGG-CGGCGGCg -3'
miRNA:   3'- -UCC------UGCUCCUA-CU-----CCUCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 145488 0.66 0.936882
Target:  5'- gAGGaucGCGAGGAUGAGGcgugcgaagGGGugcGCGAggcCGGCc -3'
miRNA:   3'- -UCC---UGCUCCUACUCC---------UCC---UGCU---GCUG- -5'
11140 5' -56.1 NC_002794.1 + 66610 0.66 0.933999
Target:  5'- cGGAgGAGGGUGAugauaggcgguggcgGGAGGAgguccgucCGGgGGCa -3'
miRNA:   3'- uCCUgCUCCUACU---------------CCUCCU--------GCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 159895 0.66 0.932032
Target:  5'- gAGGGCGGGGuagcgaaGGGuAGGugGGuCGGCu -3'
miRNA:   3'- -UCCUGCUCCuac----UCC-UCCugCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 107506 0.66 0.932032
Target:  5'- -uGACGGGGGUGccGGucGACGcCGACg -3'
miRNA:   3'- ucCUGCUCCUACu-CCucCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 128095 0.67 0.926955
Target:  5'- cGGcGACGGGGAgcucGAcGGGGGGCu-CGGCg -3'
miRNA:   3'- -UC-CUGCUCCUa---CU-CCUCCUGcuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 106361 0.67 0.926435
Target:  5'- cGGGCGGGcGccGGuucgcgcGGAGGGCaGACGGCg -3'
miRNA:   3'- uCCUGCUC-CuaCU-------CCUCCUG-CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 141797 0.67 0.92165
Target:  5'- cGGGCGcGGGUcGGccucGGAcagccgguuGGACGACGACg -3'
miRNA:   3'- uCCUGCuCCUA-CU----CCU---------CCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 90014 0.67 0.916117
Target:  5'- cGGGACGGagaucgacguGGAguUGAGucGGACGgACGGCg -3'
miRNA:   3'- -UCCUGCU----------CCU--ACUCcuCCUGC-UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 128404 0.67 0.910358
Target:  5'- uGGGCGAGGGgaccGGGGAGaccGgGAUGACc -3'
miRNA:   3'- uCCUGCUCCUa---CUCCUCc--UgCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.