Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11140 | 5' | -56.1 | NC_002794.1 | + | 118994 | 0.69 | 0.848761 |
Target: 5'- cGGGcGCGGGGAgacGAGGGGGAacACGAa -3' miRNA: 3'- -UCC-UGCUCCUa--CUCCUCCUgcUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 112362 | 0.7 | 0.762987 |
Target: 5'- cGGGGCGGGGAgcugcuGGAacucggcacgcaGGGCGGCGAUc -3' miRNA: 3'- -UCCUGCUCCUacu---CCU------------CCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 107606 | 0.7 | 0.772198 |
Target: 5'- gGGaGACGGGGAaGAcGGGGACGGUGGCg -3' miRNA: 3'- -UC-CUGCUCCUaCUcCUCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 146523 | 0.7 | 0.772198 |
Target: 5'- cGGGaccGCGAcGGAUccGGAGGACG-CGACg -3' miRNA: 3'- -UCC---UGCU-CCUAcuCCUCCUGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 140129 | 0.7 | 0.807765 |
Target: 5'- cGGugGGcGGGUGGGGA--ACGACGAg -3' miRNA: 3'- uCCugCU-CCUACUCCUccUGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 21910 | 0.7 | 0.807765 |
Target: 5'- cGGugGuGGcgGcGGAGacGACGGCGGCg -3' miRNA: 3'- uCCugCuCCuaCuCCUC--CUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 149468 | 0.7 | 0.790253 |
Target: 5'- cGGuCGAGGAgcgaGGGGGGGCGGCa-- -3' miRNA: 3'- uCCuGCUCCUac--UCCUCCUGCUGcug -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 96907 | 0.71 | 0.715447 |
Target: 5'- cGGGCGGaGGUGGcGGAGGcgcCGGCGACa -3' miRNA: 3'- uCCUGCUcCUACU-CCUCCu--GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 108385 | 0.71 | 0.725125 |
Target: 5'- cGGAgCGGGGAgcgGAGGcuccGGCGGCGGCg -3' miRNA: 3'- uCCU-GCUCCUa--CUCCuc--CUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 42578 | 0.72 | 0.666209 |
Target: 5'- cGGACccgcGGAcgGAGGAGGGCG-CGGCg -3' miRNA: 3'- uCCUGcu--CCUa-CUCCUCCUGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 94056 | 0.72 | 0.68604 |
Target: 5'- cGGuGCGGGGgcGGcGGGGGGCGAgGGCa -3' miRNA: 3'- uCC-UGCUCCuaCU-CCUCCUGCUgCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 7811 | 0.72 | 0.68604 |
Target: 5'- cGGAUGAGGAUGAGcGGGAgGGgGGg -3' miRNA: 3'- uCCUGCUCCUACUCcUCCUgCUgCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 146649 | 0.72 | 0.709607 |
Target: 5'- cGGcGACGAacacgagccguugcuGGAcGAGGAGGACGucuCGGCg -3' miRNA: 3'- -UC-CUGCU---------------CCUaCUCCUCCUGCu--GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 55275 | 0.72 | 0.68604 |
Target: 5'- gGGGGCGGcGGUGGcggcgacGAGGGCGGCGGCg -3' miRNA: 3'- -UCCUGCUcCUACUc------CUCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 94160 | 0.73 | 0.596374 |
Target: 5'- uGGACGG---UGGGGGGGACGGgGACg -3' miRNA: 3'- uCCUGCUccuACUCCUCCUGCUgCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 95787 | 0.73 | 0.625295 |
Target: 5'- cGGGGCGAgaggcgcggcggaGGAaccgGGGGAGcGGCGGCGGCc -3' miRNA: 3'- -UCCUGCU-------------CCUa---CUCCUC-CUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 72427 | 0.73 | 0.636285 |
Target: 5'- cGGAgGAGGAgccgGcGGAGGGacCGGCGGCg -3' miRNA: 3'- uCCUgCUCCUa---CuCCUCCU--GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 178353 | 0.74 | 0.586442 |
Target: 5'- uGGcGACGAuguaccGGUGAGGAGGACGcucACGACu -3' miRNA: 3'- -UC-CUGCUc-----CUACUCCUCCUGC---UGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 40533 | 0.74 | 0.576541 |
Target: 5'- -cGACGGGaGAcGAGGGGGcCGGCGGCa -3' miRNA: 3'- ucCUGCUC-CUaCUCCUCCuGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 108355 | 0.74 | 0.547089 |
Target: 5'- cGGAgCGGGGAgcgGAGGAGGACcgGGCGcCg -3' miRNA: 3'- uCCU-GCUCCUa--CUCCUCCUG--CUGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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