Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11140 | 5' | -56.1 | NC_002794.1 | + | 95744 | 0.69 | 0.848761 |
Target: 5'- uGGACGGGGcUGGuacucGcGGGGCGGCGGCc -3' miRNA: 3'- uCCUGCUCCuACU-----CcUCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 101280 | 0.69 | 0.840909 |
Target: 5'- cGGugGcGGcgGcgGGGAGGA-GACGACg -3' miRNA: 3'- uCCugCuCCuaC--UCCUCCUgCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 144303 | 0.68 | 0.863896 |
Target: 5'- uGGACGAGGAggacGGGccgagcuguuacGAGaGCGACGACc -3' miRNA: 3'- uCCUGCUCCUa---CUC------------CUCcUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 140008 | 0.68 | 0.885093 |
Target: 5'- cGGGugGAGGccGcGGAGGcCG-CGGCc -3' miRNA: 3'- -UCCugCUCCuaCuCCUCCuGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 135649 | 0.68 | 0.878235 |
Target: 5'- cAGcGCgGAGGGUGGGGGGGuguccuccACGACGGg -3' miRNA: 3'- -UCcUG-CUCCUACUCCUCC--------UGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 139791 | 0.68 | 0.891083 |
Target: 5'- gGGGugGAaaacGGGUucacccgguuggcGAGGAccuGGACGACGAa -3' miRNA: 3'- -UCCugCU----CCUA-------------CUCCU---CCUGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 119303 | 0.68 | 0.863896 |
Target: 5'- cAGGGCGAGc-UGAcagagcucguGGAGGAucuCGGCGACg -3' miRNA: 3'- -UCCUGCUCcuACU----------CCUCCU---GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 43422 | 0.68 | 0.885093 |
Target: 5'- cGGGACGgcacgaccAGGAUGuuGGuGGGGGCGAUGuCg -3' miRNA: 3'- -UCCUGC--------UCCUAC--UC-CUCCUGCUGCuG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 91860 | 0.68 | 0.863896 |
Target: 5'- aAGuuCGAGGGUcccGGGGGuGGCGGCGGCg -3' miRNA: 3'- -UCcuGCUCCUAc--UCCUC-CUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 118242 | 0.68 | 0.856425 |
Target: 5'- gAGGAUGucggcGGGcugGAGGucggccGGGGCGGCGGCg -3' miRNA: 3'- -UCCUGCu----CCUa--CUCC------UCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 92278 | 0.68 | 0.891738 |
Target: 5'- cGGGCGAGGcgcgcaAGGucGGCGACGAg -3' miRNA: 3'- uCCUGCUCCuac---UCCucCUGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 106361 | 0.67 | 0.926435 |
Target: 5'- cGGGCGGGcGccGGuucgcgcGGAGGGCaGACGGCg -3' miRNA: 3'- uCCUGCUC-CuaCU-------CCUCCUG-CUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 128095 | 0.67 | 0.926955 |
Target: 5'- cGGcGACGGGGAgcucGAcGGGGGGCu-CGGCg -3' miRNA: 3'- -UC-CUGCUCCUa---CU-CCUCCUGcuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 141797 | 0.67 | 0.92165 |
Target: 5'- cGGGCGcGGGUcGGccucGGAcagccgguuGGACGACGACg -3' miRNA: 3'- uCCUGCuCCUA-CU----CCU---------CCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 40076 | 0.67 | 0.904373 |
Target: 5'- aGGGAaacCGGGGcgG-GGAGGGaaagacaucuUGACGACg -3' miRNA: 3'- -UCCU---GCUCCuaCuCCUCCU----------GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 145572 | 0.67 | 0.904373 |
Target: 5'- cGGACGAGcGccGAcGGAGcGGCGGcCGGCu -3' miRNA: 3'- uCCUGCUC-CuaCU-CCUC-CUGCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 128404 | 0.67 | 0.910358 |
Target: 5'- uGGGCGAGGGgaccGGGGAGaccGgGAUGACc -3' miRNA: 3'- uCCUGCUCCUa---CUCCUCc--UgCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 90014 | 0.67 | 0.916117 |
Target: 5'- cGGGACGGagaucgacguGGAguUGAGucGGACGgACGGCg -3' miRNA: 3'- -UCCUGCU----------CCU--ACUCcuCCUGC-UGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 93629 | 0.67 | 0.903763 |
Target: 5'- gGGGugGAGcGcagccugaacGUGAacuccauGGGGGGCGGCGAUu -3' miRNA: 3'- -UCCugCUC-C----------UACU-------CCUCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 1427 | 0.67 | 0.898166 |
Target: 5'- aGGGACGAccggGAGGGGGACcGgGGCg -3' miRNA: 3'- -UCCUGCUccuaCUCCUCCUGcUgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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