miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 79984 0.89 0.081871
Target:  5'- cGGcGACGAGGAggcgGAGGAGGACGAgGACg -3'
miRNA:   3'- -UC-CUGCUCCUa---CUCCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 125730 0.81 0.263718
Target:  5'- cGGGAgGAGGcgGAGGcgggccgcGGGACGGCGGCc -3'
miRNA:   3'- -UCCUgCUCCuaCUCC--------UCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 107561 0.8 0.276194
Target:  5'- cGGugGGGGAgGAGGAGGAggcggaGACGGCg -3'
miRNA:   3'- uCCugCUCCUaCUCCUCCUg-----CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 99574 0.79 0.330803
Target:  5'- cGGGCGAGGggGGugcGGAGGgcGCGGCGGCg -3'
miRNA:   3'- uCCUGCUCCuaCU---CCUCC--UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 149825 0.77 0.401244
Target:  5'- gGGGAccCGAGGAcGGGcGGGGACGAgGACg -3'
miRNA:   3'- -UCCU--GCUCCUaCUC-CUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 109148 0.77 0.40964
Target:  5'- gAGGGgGAGGcgGGGGA-GAUGGCGACg -3'
miRNA:   3'- -UCCUgCUCCuaCUCCUcCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 105879 0.77 0.425889
Target:  5'- gAGGACGuggGGGGUGGGaGAGGagucgccGCGGCGGCg -3'
miRNA:   3'- -UCCUGC---UCCUACUC-CUCC-------UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 136126 0.77 0.43547
Target:  5'- cGGGCGAagucGAaGAGGAGGGCGAgGACg -3'
miRNA:   3'- uCCUGCUc---CUaCUCCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 64699 0.76 0.444287
Target:  5'- gAGG-CGAGcGcgGAcGAGGACGACGACg -3'
miRNA:   3'- -UCCuGCUC-CuaCUcCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 183593 0.76 0.453203
Target:  5'- cGGugGGGGcgGAGGGGGGCcgcgcGCGGCc -3'
miRNA:   3'- uCCugCUCCuaCUCCUCCUGc----UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 127922 0.76 0.456797
Target:  5'- gGGGGCGGGGAUucGGGGcgugucggucauguGGACGugGACg -3'
miRNA:   3'- -UCCUGCUCCUA--CUCCu-------------CCUGCugCUG- -5'
11140 5' -56.1 NC_002794.1 + 32610 0.76 0.474991
Target:  5'- cGGGGcCGGGGAUcGggcccgccgacgaagAGGGGGGCGACGACc -3'
miRNA:   3'- -UCCU-GCUCCUA-C---------------UCCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 58946 0.75 0.537375
Target:  5'- uGGACGAGGAcGAgccgcucuucguGGAGGccgagcgccugcGCGACGACg -3'
miRNA:   3'- uCCUGCUCCUaCU------------CCUCC------------UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 126718 0.75 0.537375
Target:  5'- cGGGGCGAGGGgggUGGGuGGGGACGGuggGACg -3'
miRNA:   3'- -UCCUGCUCCU---ACUC-CUCCUGCUg--CUG- -5'
11140 5' -56.1 NC_002794.1 + 148147 0.75 0.538344
Target:  5'- cGGGGCGAGGGcggucgcgacggaagGAGGGGGucGCGACGGa -3'
miRNA:   3'- -UCCUGCUCCUa--------------CUCCUCC--UGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 108355 0.74 0.547089
Target:  5'- cGGAgCGGGGAgcgGAGGAGGACcgGGCGcCg -3'
miRNA:   3'- uCCU-GCUCCUa--CUCCUCCUG--CUGCuG- -5'
11140 5' -56.1 NC_002794.1 + 40533 0.74 0.576541
Target:  5'- -cGACGGGaGAcGAGGGGGcCGGCGGCa -3'
miRNA:   3'- ucCUGCUC-CUaCUCCUCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 178353 0.74 0.586442
Target:  5'- uGGcGACGAuguaccGGUGAGGAGGACGcucACGACu -3'
miRNA:   3'- -UC-CUGCUc-----CUACUCCUCCUGC---UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 94160 0.73 0.596374
Target:  5'- uGGACGG---UGGGGGGGACGGgGACg -3'
miRNA:   3'- uCCUGCUccuACUCCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 95787 0.73 0.625295
Target:  5'- cGGGGCGAgaggcgcggcggaGGAaccgGGGGAGcGGCGGCGGCc -3'
miRNA:   3'- -UCCUGCU-------------CCUa---CUCCUC-CUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.