miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 72427 0.73 0.636285
Target:  5'- cGGAgGAGGAgccgGcGGAGGGacCGGCGGCg -3'
miRNA:   3'- uCCUgCUCCUa---CuCCUCCU--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 42578 0.72 0.666209
Target:  5'- cGGACccgcGGAcgGAGGAGGGCG-CGGCg -3'
miRNA:   3'- uCCUGcu--CCUa-CUCCUCCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 94056 0.72 0.68604
Target:  5'- cGGuGCGGGGgcGGcGGGGGGCGAgGGCa -3'
miRNA:   3'- uCC-UGCUCCuaCU-CCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 55275 0.72 0.68604
Target:  5'- gGGGGCGGcGGUGGcggcgacGAGGGCGGCGGCg -3'
miRNA:   3'- -UCCUGCUcCUACUc------CUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 7811 0.72 0.68604
Target:  5'- cGGAUGAGGAUGAGcGGGAgGGgGGg -3'
miRNA:   3'- uCCUGCUCCUACUCcUCCUgCUgCUg -5'
11140 5' -56.1 NC_002794.1 + 146649 0.72 0.709607
Target:  5'- cGGcGACGAacacgagccguugcuGGAcGAGGAGGACGucuCGGCg -3'
miRNA:   3'- -UC-CUGCU---------------CCUaCUCCUCCUGCu--GCUG- -5'
11140 5' -56.1 NC_002794.1 + 96907 0.71 0.715447
Target:  5'- cGGGCGGaGGUGGcGGAGGcgcCGGCGACa -3'
miRNA:   3'- uCCUGCUcCUACU-CCUCCu--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 108385 0.71 0.725125
Target:  5'- cGGAgCGGGGAgcgGAGGcuccGGCGGCGGCg -3'
miRNA:   3'- uCCU-GCUCCUa--CUCCuc--CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 112362 0.7 0.762987
Target:  5'- cGGGGCGGGGAgcugcuGGAacucggcacgcaGGGCGGCGAUc -3'
miRNA:   3'- -UCCUGCUCCUacu---CCU------------CCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 146523 0.7 0.772198
Target:  5'- cGGGaccGCGAcGGAUccGGAGGACG-CGACg -3'
miRNA:   3'- -UCC---UGCU-CCUAcuCCUCCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 107606 0.7 0.772198
Target:  5'- gGGaGACGGGGAaGAcGGGGACGGUGGCg -3'
miRNA:   3'- -UC-CUGCUCCUaCUcCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 149468 0.7 0.790253
Target:  5'- cGGuCGAGGAgcgaGGGGGGGCGGCa-- -3'
miRNA:   3'- uCCuGCUCCUac--UCCUCCUGCUGcug -5'
11140 5' -56.1 NC_002794.1 + 21910 0.7 0.807765
Target:  5'- cGGugGuGGcgGcGGAGacGACGGCGGCg -3'
miRNA:   3'- uCCugCuCCuaCuCCUC--CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 140129 0.7 0.807765
Target:  5'- cGGugGGcGGGUGGGGA--ACGACGAg -3'
miRNA:   3'- uCCugCU-CCUACUCCUccUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 48427 0.69 0.816298
Target:  5'- cGGAUaGGGcgGAGGuGG-CGGCGGCc -3'
miRNA:   3'- uCCUGcUCCuaCUCCuCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 177952 0.69 0.824671
Target:  5'- -cGGCGAGGucgGuGGAcGGugGugGACg -3'
miRNA:   3'- ucCUGCUCCua-CuCCU-CCugCugCUG- -5'
11140 5' -56.1 NC_002794.1 + 191869 0.69 0.832877
Target:  5'- aAGGcCGGcGGcgGAGG-GGGCGGCGGa -3'
miRNA:   3'- -UCCuGCU-CCuaCUCCuCCUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 64881 0.69 0.832877
Target:  5'- gAGGACGAaGAcGAGGAaGAagaaGACGACg -3'
miRNA:   3'- -UCCUGCUcCUaCUCCUcCUg---CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 101280 0.69 0.840909
Target:  5'- cGGugGcGGcgGcgGGGAGGA-GACGACg -3'
miRNA:   3'- uCCugCuCCuaC--UCCUCCUgCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 115962 0.69 0.848761
Target:  5'- gGGGACcguGGGGggGAGcGGGACGgggaGCGGCg -3'
miRNA:   3'- -UCCUG---CUCCuaCUCcUCCUGC----UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.