miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 145572 0.67 0.904373
Target:  5'- cGGACGAGcGccGAcGGAGcGGCGGcCGGCu -3'
miRNA:   3'- uCCUGCUC-CuaCU-CCUC-CUGCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 40076 0.67 0.904373
Target:  5'- aGGGAaacCGGGGcgG-GGAGGGaaagacaucuUGACGACg -3'
miRNA:   3'- -UCCU---GCUCCuaCuCCUCCU----------GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 93629 0.67 0.903763
Target:  5'- gGGGugGAGcGcagccugaacGUGAacuccauGGGGGGCGGCGAUu -3'
miRNA:   3'- -UCCugCUC-C----------UACU-------CCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 1427 0.67 0.898166
Target:  5'- aGGGACGAccggGAGGGGGACcGgGGCg -3'
miRNA:   3'- -UCCUGCUccuaCUCCUCCUGcUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 92278 0.68 0.891738
Target:  5'- cGGGCGAGGcgcgcaAGGucGGCGACGAg -3'
miRNA:   3'- uCCUGCUCCuac---UCCucCUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 139791 0.68 0.891083
Target:  5'- gGGGugGAaaacGGGUucacccgguuggcGAGGAccuGGACGACGAa -3'
miRNA:   3'- -UCCugCU----CCUA-------------CUCCU---CCUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 43422 0.68 0.885093
Target:  5'- cGGGACGgcacgaccAGGAUGuuGGuGGGGGCGAUGuCg -3'
miRNA:   3'- -UCCUGC--------UCCUAC--UC-CUCCUGCUGCuG- -5'
11140 5' -56.1 NC_002794.1 + 140008 0.68 0.885093
Target:  5'- cGGGugGAGGccGcGGAGGcCG-CGGCc -3'
miRNA:   3'- -UCCugCUCCuaCuCCUCCuGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 135649 0.68 0.878235
Target:  5'- cAGcGCgGAGGGUGGGGGGGuguccuccACGACGGg -3'
miRNA:   3'- -UCcUG-CUCCUACUCCUCC--------UGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 91860 0.68 0.863896
Target:  5'- aAGuuCGAGGGUcccGGGGGuGGCGGCGGCg -3'
miRNA:   3'- -UCcuGCUCCUAc--UCCUC-CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 144303 0.68 0.863896
Target:  5'- uGGACGAGGAggacGGGccgagcuguuacGAGaGCGACGACc -3'
miRNA:   3'- uCCUGCUCCUa---CUC------------CUCcUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 119303 0.68 0.863896
Target:  5'- cAGGGCGAGc-UGAcagagcucguGGAGGAucuCGGCGACg -3'
miRNA:   3'- -UCCUGCUCcuACU----------CCUCCU---GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 118242 0.68 0.856425
Target:  5'- gAGGAUGucggcGGGcugGAGGucggccGGGGCGGCGGCg -3'
miRNA:   3'- -UCCUGCu----CCUa--CUCC------UCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 95744 0.69 0.848761
Target:  5'- uGGACGGGGcUGGuacucGcGGGGCGGCGGCc -3'
miRNA:   3'- uCCUGCUCCuACU-----CcUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 115962 0.69 0.848761
Target:  5'- gGGGACcguGGGGggGAGcGGGACGgggaGCGGCg -3'
miRNA:   3'- -UCCUG---CUCCuaCUCcUCCUGC----UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 118994 0.69 0.848761
Target:  5'- cGGGcGCGGGGAgacGAGGGGGAacACGAa -3'
miRNA:   3'- -UCC-UGCUCCUa--CUCCUCCUgcUGCUg -5'
11140 5' -56.1 NC_002794.1 + 101280 0.69 0.840909
Target:  5'- cGGugGcGGcgGcgGGGAGGA-GACGACg -3'
miRNA:   3'- uCCugCuCCuaC--UCCUCCUgCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 191869 0.69 0.832877
Target:  5'- aAGGcCGGcGGcgGAGG-GGGCGGCGGa -3'
miRNA:   3'- -UCCuGCU-CCuaCUCCuCCUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 64881 0.69 0.832877
Target:  5'- gAGGACGAaGAcGAGGAaGAagaaGACGACg -3'
miRNA:   3'- -UCCUGCUcCUaCUCCUcCUg---CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 177952 0.69 0.824671
Target:  5'- -cGGCGAGGucgGuGGAcGGugGugGACg -3'
miRNA:   3'- ucCUGCUCCua-CuCCU-CCugCugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.