miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 207 0.66 0.941505
Target:  5'- cGGcCGGGGG-GAGGGGGuccaGACGGg -3'
miRNA:   3'- uCCuGCUCCUaCUCCUCCug--CUGCUg -5'
11140 5' -56.1 NC_002794.1 + 1427 0.67 0.898166
Target:  5'- aGGGACGAccggGAGGGGGACcGgGGCg -3'
miRNA:   3'- -UCCUGCUccuaCUCCUCCUGcUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 7811 0.72 0.68604
Target:  5'- cGGAUGAGGAUGAGcGGGAgGGgGGg -3'
miRNA:   3'- uCCUGCUCCUACUCcUCCUgCUgCUg -5'
11140 5' -56.1 NC_002794.1 + 21910 0.7 0.807765
Target:  5'- cGGugGuGGcgGcGGAGacGACGGCGGCg -3'
miRNA:   3'- uCCugCuCCuaCuCCUC--CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 32610 0.76 0.474991
Target:  5'- cGGGGcCGGGGAUcGggcccgccgacgaagAGGGGGGCGACGACc -3'
miRNA:   3'- -UCCU-GCUCCUA-C---------------UCCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 37882 0.66 0.945903
Target:  5'- cGGGCGGcGGggGcGGuGG-CGGCGGCa -3'
miRNA:   3'- uCCUGCU-CCuaCuCCuCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 40076 0.67 0.904373
Target:  5'- aGGGAaacCGGGGcgG-GGAGGGaaagacaucuUGACGACg -3'
miRNA:   3'- -UCCU---GCUCCuaCuCCUCCU----------GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 40533 0.74 0.576541
Target:  5'- -cGACGGGaGAcGAGGGGGcCGGCGGCa -3'
miRNA:   3'- ucCUGCUC-CUaCUCCUCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 42578 0.72 0.666209
Target:  5'- cGGACccgcGGAcgGAGGAGGGCG-CGGCg -3'
miRNA:   3'- uCCUGcu--CCUa-CUCCUCCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 43422 0.68 0.885093
Target:  5'- cGGGACGgcacgaccAGGAUGuuGGuGGGGGCGAUGuCg -3'
miRNA:   3'- -UCCUGC--------UCCUAC--UC-CUCCUGCUGCuG- -5'
11140 5' -56.1 NC_002794.1 + 48427 0.69 0.816298
Target:  5'- cGGAUaGGGcgGAGGuGG-CGGCGGCc -3'
miRNA:   3'- uCCUGcUCCuaCUCCuCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 55275 0.72 0.68604
Target:  5'- gGGGGCGGcGGUGGcggcgacGAGGGCGGCGGCg -3'
miRNA:   3'- -UCCUGCUcCUACUc------CUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 58946 0.75 0.537375
Target:  5'- uGGACGAGGAcGAgccgcucuucguGGAGGccgagcgccugcGCGACGACg -3'
miRNA:   3'- uCCUGCUCCUaCU------------CCUCC------------UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 64699 0.76 0.444287
Target:  5'- gAGG-CGAGcGcgGAcGAGGACGACGACg -3'
miRNA:   3'- -UCCuGCUC-CuaCUcCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 64881 0.69 0.832877
Target:  5'- gAGGACGAaGAcGAGGAaGAagaaGACGACg -3'
miRNA:   3'- -UCCUGCUcCUaCUCCUcCUg---CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 66610 0.66 0.933999
Target:  5'- cGGAgGAGGGUGAugauaggcgguggcgGGAGGAgguccgucCGGgGGCa -3'
miRNA:   3'- uCCUgCUCCUACU---------------CCUCCU--------GCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 72427 0.73 0.636285
Target:  5'- cGGAgGAGGAgccgGcGGAGGGacCGGCGGCg -3'
miRNA:   3'- uCCUgCUCCUa---CuCCUCCU--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 79984 0.89 0.081871
Target:  5'- cGGcGACGAGGAggcgGAGGAGGACGAgGACg -3'
miRNA:   3'- -UC-CUGCUCCUa---CUCCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 90014 0.67 0.916117
Target:  5'- cGGGACGGagaucgacguGGAguUGAGucGGACGgACGGCg -3'
miRNA:   3'- -UCCUGCU----------CCU--ACUCcuCCUGC-UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 91860 0.68 0.863896
Target:  5'- aAGuuCGAGGGUcccGGGGGuGGCGGCGGCg -3'
miRNA:   3'- -UCcuGCUCCUAc--UCCUC-CUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.