miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 92278 0.68 0.891738
Target:  5'- cGGGCGAGGcgcgcaAGGucGGCGACGAg -3'
miRNA:   3'- uCCUGCUCCuac---UCCucCUGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 93629 0.67 0.903763
Target:  5'- gGGGugGAGcGcagccugaacGUGAacuccauGGGGGGCGGCGAUu -3'
miRNA:   3'- -UCCugCUC-C----------UACU-------CCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 94056 0.72 0.68604
Target:  5'- cGGuGCGGGGgcGGcGGGGGGCGAgGGCa -3'
miRNA:   3'- uCC-UGCUCCuaCU-CCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 94160 0.73 0.596374
Target:  5'- uGGACGG---UGGGGGGGACGGgGACg -3'
miRNA:   3'- uCCUGCUccuACUCCUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 95551 0.66 0.950077
Target:  5'- --aGCGAGGcgcagcUGGGcGAGGACGAgCGGCu -3'
miRNA:   3'- uccUGCUCCu-----ACUC-CUCCUGCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 95744 0.69 0.848761
Target:  5'- uGGACGGGGcUGGuacucGcGGGGCGGCGGCc -3'
miRNA:   3'- uCCUGCUCCuACU-----CcUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 95787 0.73 0.625295
Target:  5'- cGGGGCGAgaggcgcggcggaGGAaccgGGGGAGcGGCGGCGGCc -3'
miRNA:   3'- -UCCUGCU-------------CCUa---CUCCUC-CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 96907 0.71 0.715447
Target:  5'- cGGGCGGaGGUGGcGGAGGcgcCGGCGACa -3'
miRNA:   3'- uCCUGCUcCUACU-CCUCCu--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 99365 0.66 0.941505
Target:  5'- uGGACGAaGAgaagcGGGAGGugcCGACGAUg -3'
miRNA:   3'- uCCUGCUcCUac---UCCUCCu--GCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 99574 0.79 0.330803
Target:  5'- cGGGCGAGGggGGugcGGAGGgcGCGGCGGCg -3'
miRNA:   3'- uCCUGCUCCuaCU---CCUCC--UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 101280 0.69 0.840909
Target:  5'- cGGugGcGGcgGcgGGGAGGA-GACGACg -3'
miRNA:   3'- uCCugCuCCuaC--UCCUCCUgCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 105879 0.77 0.425889
Target:  5'- gAGGACGuggGGGGUGGGaGAGGagucgccGCGGCGGCg -3'
miRNA:   3'- -UCCUGC---UCCUACUC-CUCC-------UGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 106361 0.67 0.926435
Target:  5'- cGGGCGGGcGccGGuucgcgcGGAGGGCaGACGGCg -3'
miRNA:   3'- uCCUGCUC-CuaCU-------CCUCCUG-CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 107506 0.66 0.932032
Target:  5'- -uGACGGGGGUGccGGucGACGcCGACg -3'
miRNA:   3'- ucCUGCUCCUACu-CCucCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 107561 0.8 0.276194
Target:  5'- cGGugGGGGAgGAGGAGGAggcggaGACGGCg -3'
miRNA:   3'- uCCugCUCCUaCUCCUCCUg-----CUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 107606 0.7 0.772198
Target:  5'- gGGaGACGGGGAaGAcGGGGACGGUGGCg -3'
miRNA:   3'- -UC-CUGCUCCUaCUcCUCCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 108355 0.74 0.547089
Target:  5'- cGGAgCGGGGAgcgGAGGAGGACcgGGCGcCg -3'
miRNA:   3'- uCCU-GCUCCUa--CUCCUCCUG--CUGCuG- -5'
11140 5' -56.1 NC_002794.1 + 108385 0.71 0.725125
Target:  5'- cGGAgCGGGGAgcgGAGGcuccGGCGGCGGCg -3'
miRNA:   3'- uCCU-GCUCCUa--CUCCuc--CUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 109148 0.77 0.40964
Target:  5'- gAGGGgGAGGcgGGGGA-GAUGGCGACg -3'
miRNA:   3'- -UCCUgCUCCuaCUCCUcCUGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 109223 0.66 0.941505
Target:  5'- aAGGACaAGGAcaagGAGaAGGACGAgGAg -3'
miRNA:   3'- -UCCUGcUCCUa---CUCcUCCUGCUgCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.