miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11140 5' -56.1 NC_002794.1 + 145488 0.66 0.936882
Target:  5'- gAGGaucGCGAGGAUGAGGcgugcgaagGGGugcGCGAggcCGGCc -3'
miRNA:   3'- -UCC---UGCUCCUACUCC---------UCC---UGCU---GCUG- -5'
11140 5' -56.1 NC_002794.1 + 145572 0.67 0.904373
Target:  5'- cGGACGAGcGccGAcGGAGcGGCGGcCGGCu -3'
miRNA:   3'- uCCUGCUC-CuaCU-CCUC-CUGCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 145709 0.66 0.936882
Target:  5'- gAGGccgaaaACGGGGAUcGGgcgcuGGAGG-CGGCGGCg -3'
miRNA:   3'- -UCC------UGCUCCUA-CU-----CCUCCuGCUGCUG- -5'
11140 5' -56.1 NC_002794.1 + 146523 0.7 0.772198
Target:  5'- cGGGaccGCGAcGGAUccGGAGGACG-CGACg -3'
miRNA:   3'- -UCC---UGCU-CCUAcuCCUCCUGCuGCUG- -5'
11140 5' -56.1 NC_002794.1 + 146649 0.72 0.709607
Target:  5'- cGGcGACGAacacgagccguugcuGGAcGAGGAGGACGucuCGGCg -3'
miRNA:   3'- -UC-CUGCU---------------CCUaCUCCUCCUGCu--GCUG- -5'
11140 5' -56.1 NC_002794.1 + 146748 0.66 0.950077
Target:  5'- cGGGcCGcGGAUcgGGGGAGGgACGAUGGu -3'
miRNA:   3'- -UCCuGCuCCUA--CUCCUCC-UGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 148147 0.75 0.538344
Target:  5'- cGGGGCGAGGGcggucgcgacggaagGAGGGGGucGCGACGGa -3'
miRNA:   3'- -UCCUGCUCCUa--------------CUCCUCC--UGCUGCUg -5'
11140 5' -56.1 NC_002794.1 + 149468 0.7 0.790253
Target:  5'- cGGuCGAGGAgcgaGGGGGGGCGGCa-- -3'
miRNA:   3'- uCCuGCUCCUac--UCCUCCUGCUGcug -5'
11140 5' -56.1 NC_002794.1 + 149601 0.66 0.945903
Target:  5'- uGGAcCGAGGAgcccccGAcGGGGACGugGgACg -3'
miRNA:   3'- uCCU-GCUCCUa-----CUcCUCCUGCugC-UG- -5'
11140 5' -56.1 NC_002794.1 + 149825 0.77 0.401244
Target:  5'- gGGGAccCGAGGAcGGGcGGGGACGAgGACg -3'
miRNA:   3'- -UCCU--GCUCCUaCUC-CUCCUGCUgCUG- -5'
11140 5' -56.1 NC_002794.1 + 159895 0.66 0.932032
Target:  5'- gAGGGCGGGGuagcgaaGGGuAGGugGGuCGGCu -3'
miRNA:   3'- -UCCUGCUCCuac----UCC-UCCugCU-GCUG- -5'
11140 5' -56.1 NC_002794.1 + 177952 0.69 0.824671
Target:  5'- -cGGCGAGGucgGuGGAcGGugGugGACg -3'
miRNA:   3'- ucCUGCUCCua-CuCCU-CCugCugCUG- -5'
11140 5' -56.1 NC_002794.1 + 178353 0.74 0.586442
Target:  5'- uGGcGACGAuguaccGGUGAGGAGGACGcucACGACu -3'
miRNA:   3'- -UC-CUGCUc-----CUACUCCUCCUGC---UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 183593 0.76 0.453203
Target:  5'- cGGugGGGGcgGAGGGGGGCcgcgcGCGGCc -3'
miRNA:   3'- uCCugCUCCuaCUCCUCCUGc----UGCUG- -5'
11140 5' -56.1 NC_002794.1 + 191869 0.69 0.832877
Target:  5'- aAGGcCGGcGGcgGAGG-GGGCGGCGGa -3'
miRNA:   3'- -UCCuGCU-CCuaCUCCuCCUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.