Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11140 | 5' | -56.1 | NC_002794.1 | + | 79984 | 0.89 | 0.081871 |
Target: 5'- cGGcGACGAGGAggcgGAGGAGGACGAgGACg -3' miRNA: 3'- -UC-CUGCUCCUa---CUCCUCCUGCUgCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 159895 | 0.66 | 0.932032 |
Target: 5'- gAGGGCGGGGuagcgaaGGGuAGGugGGuCGGCu -3' miRNA: 3'- -UCCUGCUCCuac----UCC-UCCugCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 66610 | 0.66 | 0.933999 |
Target: 5'- cGGAgGAGGGUGAugauaggcgguggcgGGAGGAgguccgucCGGgGGCa -3' miRNA: 3'- uCCUgCUCCUACU---------------CCUCCU--------GCUgCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 107506 | 0.66 | 0.932032 |
Target: 5'- -uGACGGGGGUGccGGucGACGcCGACg -3' miRNA: 3'- ucCUGCUCCUACu-CCucCUGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 106361 | 0.67 | 0.926435 |
Target: 5'- cGGGCGGGcGccGGuucgcgcGGAGGGCaGACGGCg -3' miRNA: 3'- uCCUGCUC-CuaCU-------CCUCCUG-CUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 128095 | 0.67 | 0.926955 |
Target: 5'- cGGcGACGGGGAgcucGAcGGGGGGCu-CGGCg -3' miRNA: 3'- -UC-CUGCUCCUa---CU-CCUCCUGcuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 141797 | 0.67 | 0.92165 |
Target: 5'- cGGGCGcGGGUcGGccucGGAcagccgguuGGACGACGACg -3' miRNA: 3'- uCCUGCuCCUA-CU----CCU---------CCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 40076 | 0.67 | 0.904373 |
Target: 5'- aGGGAaacCGGGGcgG-GGAGGGaaagacaucuUGACGACg -3' miRNA: 3'- -UCCU---GCUCCuaCuCCUCCU----------GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 145572 | 0.67 | 0.904373 |
Target: 5'- cGGACGAGcGccGAcGGAGcGGCGGcCGGCu -3' miRNA: 3'- uCCUGCUC-CuaCU-CCUC-CUGCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 145709 | 0.66 | 0.936882 |
Target: 5'- gAGGccgaaaACGGGGAUcGGgcgcuGGAGG-CGGCGGCg -3' miRNA: 3'- -UCC------UGCUCCUA-CU-----CCUCCuGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 145488 | 0.66 | 0.936882 |
Target: 5'- gAGGaucGCGAGGAUGAGGcgugcgaagGGGugcGCGAggcCGGCc -3' miRNA: 3'- -UCC---UGCUCCUACUCC---------UCC---UGCU---GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 142226 | 0.66 | 0.941505 |
Target: 5'- cGGuGCGGGGAgcgGcGGAGG-CGGCGGu -3' miRNA: 3'- uCC-UGCUCCUa--CuCCUCCuGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 146748 | 0.66 | 0.950077 |
Target: 5'- cGGGcCGcGGAUcgGGGGAGGgACGAUGGu -3' miRNA: 3'- -UCCuGCuCCUA--CUCCUCC-UGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 37882 | 0.66 | 0.945903 |
Target: 5'- cGGGCGGcGGggGcGGuGG-CGGCGGCa -3' miRNA: 3'- uCCUGCU-CCuaCuCCuCCuGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 149601 | 0.66 | 0.945903 |
Target: 5'- uGGAcCGAGGAgcccccGAcGGGGACGugGgACg -3' miRNA: 3'- uCCU-GCUCCUa-----CUcCUCCUGCugC-UG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 95551 | 0.66 | 0.950077 |
Target: 5'- --aGCGAGGcgcagcUGGGcGAGGACGAgCGGCu -3' miRNA: 3'- uccUGCUCCu-----ACUC-CUCCUGCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 109223 | 0.66 | 0.941505 |
Target: 5'- aAGGACaAGGAcaagGAGaAGGACGAgGAg -3' miRNA: 3'- -UCCUGcUCCUa---CUCcUCCUGCUgCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 120794 | 0.66 | 0.945473 |
Target: 5'- -cGGCGAGGGUGAcguuuuuGGAGcGGCagcuGCGACa -3' miRNA: 3'- ucCUGCUCCUACU-------CCUC-CUGc---UGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 207 | 0.66 | 0.941505 |
Target: 5'- cGGcCGGGGG-GAGGGGGuccaGACGGg -3' miRNA: 3'- uCCuGCUCCUaCUCCUCCug--CUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 99365 | 0.66 | 0.941505 |
Target: 5'- uGGACGAaGAgaagcGGGAGGugcCGACGAUg -3' miRNA: 3'- uCCUGCUcCUac---UCCUCCu--GCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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