Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11140 | 5' | -56.1 | NC_002794.1 | + | 109223 | 0.66 | 0.941505 |
Target: 5'- aAGGACaAGGAcaagGAGaAGGACGAgGAg -3' miRNA: 3'- -UCCUGcUCCUa---CUCcUCCUGCUgCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 95551 | 0.66 | 0.950077 |
Target: 5'- --aGCGAGGcgcagcUGGGcGAGGACGAgCGGCu -3' miRNA: 3'- uccUGCUCCu-----ACUC-CUCCUGCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 149601 | 0.66 | 0.945903 |
Target: 5'- uGGAcCGAGGAgcccccGAcGGGGACGugGgACg -3' miRNA: 3'- uCCU-GCUCCUa-----CUcCUCCUGCugC-UG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 37882 | 0.66 | 0.945903 |
Target: 5'- cGGGCGGcGGggGcGGuGG-CGGCGGCa -3' miRNA: 3'- uCCUGCU-CCuaCuCCuCCuGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 146748 | 0.66 | 0.950077 |
Target: 5'- cGGGcCGcGGAUcgGGGGAGGgACGAUGGu -3' miRNA: 3'- -UCCuGCuCCUA--CUCCUCC-UGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 107506 | 0.66 | 0.932032 |
Target: 5'- -uGACGGGGGUGccGGucGACGcCGACg -3' miRNA: 3'- ucCUGCUCCUACu-CCucCUGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 106361 | 0.67 | 0.926435 |
Target: 5'- cGGGCGGGcGccGGuucgcgcGGAGGGCaGACGGCg -3' miRNA: 3'- uCCUGCUC-CuaCU-------CCUCCUG-CUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 135649 | 0.68 | 0.878235 |
Target: 5'- cAGcGCgGAGGGUGGGGGGGuguccuccACGACGGg -3' miRNA: 3'- -UCcUG-CUCCUACUCCUCC--------UGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 140008 | 0.68 | 0.885093 |
Target: 5'- cGGGugGAGGccGcGGAGGcCG-CGGCc -3' miRNA: 3'- -UCCugCUCCuaCuCCUCCuGCuGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 43422 | 0.68 | 0.885093 |
Target: 5'- cGGGACGgcacgaccAGGAUGuuGGuGGGGGCGAUGuCg -3' miRNA: 3'- -UCCUGC--------UCCUAC--UC-CUCCUGCUGCuG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 92278 | 0.68 | 0.891738 |
Target: 5'- cGGGCGAGGcgcgcaAGGucGGCGACGAg -3' miRNA: 3'- uCCUGCUCCuac---UCCucCUGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 139791 | 0.68 | 0.891083 |
Target: 5'- gGGGugGAaaacGGGUucacccgguuggcGAGGAccuGGACGACGAa -3' miRNA: 3'- -UCCugCU----CCUA-------------CUCCU---CCUGCUGCUg -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 1427 | 0.67 | 0.898166 |
Target: 5'- aGGGACGAccggGAGGGGGACcGgGGCg -3' miRNA: 3'- -UCCUGCUccuaCUCCUCCUGcUgCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 93629 | 0.67 | 0.903763 |
Target: 5'- gGGGugGAGcGcagccugaacGUGAacuccauGGGGGGCGGCGAUu -3' miRNA: 3'- -UCCugCUC-C----------UACU-------CCUCCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 90014 | 0.67 | 0.916117 |
Target: 5'- cGGGACGGagaucgacguGGAguUGAGucGGACGgACGGCg -3' miRNA: 3'- -UCCUGCU----------CCU--ACUCcuCCUGC-UGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 128404 | 0.67 | 0.910358 |
Target: 5'- uGGGCGAGGGgaccGGGGAGaccGgGAUGACc -3' miRNA: 3'- uCCUGCUCCUa---CUCCUCc--UgCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 145572 | 0.67 | 0.904373 |
Target: 5'- cGGACGAGcGccGAcGGAGcGGCGGcCGGCu -3' miRNA: 3'- uCCUGCUC-CuaCU-CCUC-CUGCU-GCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 40076 | 0.67 | 0.904373 |
Target: 5'- aGGGAaacCGGGGcgG-GGAGGGaaagacaucuUGACGACg -3' miRNA: 3'- -UCCU---GCUCCuaCuCCUCCU----------GCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 141797 | 0.67 | 0.92165 |
Target: 5'- cGGGCGcGGGUcGGccucGGAcagccgguuGGACGACGACg -3' miRNA: 3'- uCCUGCuCCUA-CU----CCU---------CCUGCUGCUG- -5' |
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11140 | 5' | -56.1 | NC_002794.1 | + | 128095 | 0.67 | 0.926955 |
Target: 5'- cGGcGACGGGGAgcucGAcGGGGGGCu-CGGCg -3' miRNA: 3'- -UC-CUGCUCCUa---CU-CCUCCUGcuGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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