miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 118665 0.66 0.831728
Target:  5'- cGUGGGcGCGAcGCCCGcGGCCGccgccGGcGGc -3'
miRNA:   3'- -CGCCCuCGCU-CGGGCuCUGGC-----UCuCC- -5'
11141 5' -60.5 NC_002794.1 + 125738 0.66 0.831728
Target:  5'- gGCGGaGGCGGGCCgCGGGACgGcGGccGGc -3'
miRNA:   3'- -CGCCcUCGCUCGG-GCUCUGgCuCU--CC- -5'
11141 5' -60.5 NC_002794.1 + 126625 0.66 0.831728
Target:  5'- cGCGGcguGAGCGcgaccgggcGCCCGGacgcGCCGAGAGa -3'
miRNA:   3'- -CGCC---CUCGCu--------CGGGCUc---UGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 149462 0.66 0.831728
Target:  5'- -aGGGGGCG-GUCgaGGAgCGAGGGGg -3'
miRNA:   3'- cgCCCUCGCuCGGgcUCUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 24380 0.66 0.831728
Target:  5'- aCGGG-GC---CCCGAgGACCGAGAGa -3'
miRNA:   3'- cGCCCuCGcucGGGCU-CUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 92318 0.66 0.823813
Target:  5'- cGCGGGcGGCGggGGCCCGGG--CGGGcGGc -3'
miRNA:   3'- -CGCCC-UCGC--UCGGGCUCugGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 138290 0.66 0.815744
Target:  5'- aGCGGGuGGCGgccuuGGCCCGcacgcuGuCgGGGAGGa -3'
miRNA:   3'- -CGCCC-UCGC-----UCGGGCu-----CuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 191896 0.66 0.815744
Target:  5'- gGCGGGAuCG-GCaCCGGGACCGGc--- -3'
miRNA:   3'- -CGCCCUcGCuCG-GGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 4136 0.66 0.815744
Target:  5'- cCGGGGucuuGCGAGCCCcccGGACgaCGAGGGu -3'
miRNA:   3'- cGCCCU----CGCUCGGGc--UCUG--GCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 144398 0.66 0.807528
Target:  5'- uGCGaGGAGUgcgucgcgcuGGGCCCGAGcgcccugcugcGCCGAGuGc -3'
miRNA:   3'- -CGC-CCUCG----------CUCGGGCUC-----------UGGCUCuCc -5'
11141 5' -60.5 NC_002794.1 + 14596 0.66 0.807528
Target:  5'- cGUGGcGAGCGcGCCgggcaccgcgaCGGGGCCgGAGAcGGg -3'
miRNA:   3'- -CGCC-CUCGCuCGG-----------GCUCUGG-CUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 95813 0.66 0.805036
Target:  5'- cGgGGGAGCGgcggcGGCCgGGGgagcggcggcggcgGCCGGGgAGGc -3'
miRNA:   3'- -CgCCCUCGC-----UCGGgCUC--------------UGGCUC-UCC- -5'
11141 5' -60.5 NC_002794.1 + 87182 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87224 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87140 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87098 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 3845 0.66 0.799172
Target:  5'- gGCGGG-GCuuGAGCCCcGGACCGGc--- -3'
miRNA:   3'- -CGCCCuCG--CUCGGGcUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 5053 0.66 0.798329
Target:  5'- gGUGGGGccuuugacucaccGacaGGGCCCGAgcgaGACCG-GAGGg -3'
miRNA:   3'- -CGCCCU-------------Cg--CUCGGGCU----CUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 148642 0.66 0.790682
Target:  5'- cGCGGcGGCGuGCUCGGcuacgcgccGACCGAGGagcGGa -3'
miRNA:   3'- -CGCCcUCGCuCGGGCU---------CUGGCUCU---CC- -5'
11141 5' -60.5 NC_002794.1 + 130146 0.66 0.790682
Target:  5'- uGCGcGGcGCGAGCgCGGGAUcacgcgcgCGAGAGc -3'
miRNA:   3'- -CGC-CCuCGCUCGgGCUCUG--------GCUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.