miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 70739 0.67 0.782067
Target:  5'- cCaGGAgcagcGCGAGCCCGGGaaacaGCUGGGAGa -3'
miRNA:   3'- cGcCCU-----CGCUCGGGCUC-----UGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 128229 0.67 0.782067
Target:  5'- ---cGAGCGAGCgCCGuGACgGAGAcGGu -3'
miRNA:   3'- cgccCUCGCUCG-GGCuCUGgCUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 87038 0.67 0.764487
Target:  5'- cCGGGgaccGGCGcGGCUCGGGGCCGGGu-- -3'
miRNA:   3'- cGCCC----UCGC-UCGGGCUCUGGCUCucc -5'
11141 5' -60.5 NC_002794.1 + 158443 0.67 0.764487
Target:  5'- gGCGGGuucCGcGCUCuucGGGCCGGGAGGu -3'
miRNA:   3'- -CGCCCuc-GCuCGGGc--UCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 101601 0.67 0.773333
Target:  5'- gGCGGGuGCcGGCCCGccGGgCGGGGGu -3'
miRNA:   3'- -CGCCCuCGcUCGGGCu-CUgGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 17443 0.67 0.782067
Target:  5'- cCGGcGcuCGGGCCCGcGACCGAGGu- -3'
miRNA:   3'- cGCC-CucGCUCGGGCuCUGGCUCUcc -5'
11141 5' -60.5 NC_002794.1 + 111089 0.68 0.681128
Target:  5'- gGCaGGGucGGCGGGCCCGgcgGGACCGu--GGc -3'
miRNA:   3'- -CG-CCC--UCGCUCGGGC---UCUGGCucuCC- -5'
11141 5' -60.5 NC_002794.1 + 107892 0.68 0.690632
Target:  5'- gGCGGGuGCG-GCugCCGGGuCUGAGGGa -3'
miRNA:   3'- -CGCCCuCGCuCG--GGCUCuGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 51284 0.68 0.684934
Target:  5'- cGCGGcccgcccgaacGGGCaGGCUCGAaccggucuagaagacGACCGGGAGGa -3'
miRNA:   3'- -CGCC-----------CUCGcUCGGGCU---------------CUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 110278 0.68 0.69915
Target:  5'- gGCGGccGCcguccucGGGCCCGAGAgCCGcGGGGa -3'
miRNA:   3'- -CGCCcuCG-------CUCGGGCUCU-GGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 21586 0.68 0.694422
Target:  5'- cGCGaccGGGGCGGucuguGCCCGuGacccaccgcgccgucGCCGGGAGGa -3'
miRNA:   3'- -CGC---CCUCGCU-----CGGGCuC---------------UGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 104449 0.68 0.709504
Target:  5'- cGCGG--GCG-GCCCGAGcCCGGGcGGc -3'
miRNA:   3'- -CGCCcuCGCuCGGGCUCuGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 94416 0.68 0.700094
Target:  5'- gGUGuGGGGCGcGCCCGAcaACCuGGAGGc -3'
miRNA:   3'- -CGC-CCUCGCuCGGGCUc-UGGcUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 42608 0.68 0.718858
Target:  5'- cCGGGAGCGGGCUcucuCGAcGACCGcgcucucacagcGGAGu -3'
miRNA:   3'- cGCCCUCGCUCGG----GCU-CUGGC------------UCUCc -5'
11141 5' -60.5 NC_002794.1 + 98905 0.68 0.713253
Target:  5'- cGCGGucucgacgacuucauGAGCGGGCUgGGcgcGGCCGGGaAGGg -3'
miRNA:   3'- -CGCC---------------CUCGCUCGGgCU---CUGGCUC-UCC- -5'
11141 5' -60.5 NC_002794.1 + 145908 0.68 0.718858
Target:  5'- cGgGGGAGuCGAccGCgCCGAG-CgGAGGGGc -3'
miRNA:   3'- -CgCCCUC-GCU--CG-GGCUCuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 20406 0.68 0.725366
Target:  5'- cCGGGAGCGGGgccacacggucuacCCCGc-GCCG-GAGGa -3'
miRNA:   3'- cGCCCUCGCUC--------------GGGCucUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 7823 0.68 0.728145
Target:  5'- aGCGGGAGgGggGGCCguccauCGGGACgGGGGGu -3'
miRNA:   3'- -CGCCCUCgC--UCGG------GCUCUGgCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 126593 0.68 0.728145
Target:  5'- cCGGGAcUGAGCgCCGAGGCCGGc--- -3'
miRNA:   3'- cGCCCUcGCUCG-GGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 142915 0.68 0.72722
Target:  5'- cCGGGGGCcgGAGCagGAuguagaagcagguGGCCGAGGGGa -3'
miRNA:   3'- cGCCCUCG--CUCGggCU-------------CUGGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.