miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 55342 0.69 0.652431
Target:  5'- cCGGGGuCGcGCCCGAGgcgGCCGAGGcGGc -3'
miRNA:   3'- cGCCCUcGCuCGGGCUC---UGGCUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 6144 0.69 0.66202
Target:  5'- -gGGGGGCgGAGCCCGAGcaucaacuucACCGucaaAGAcGGa -3'
miRNA:   3'- cgCCCUCG-CUCGGGCUC----------UGGC----UCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 49739 0.69 0.642827
Target:  5'- cGUGGuGGCGAGCCCGuAGGCCGc---- -3'
miRNA:   3'- -CGCCcUCGCUCGGGC-UCUGGCucucc -5'
11141 5' -60.5 NC_002794.1 + 116410 0.7 0.566267
Target:  5'- gGCGGGGcGCGAGCaCCaGGGCgCGGGucAGGa -3'
miRNA:   3'- -CGCCCU-CGCUCG-GGcUCUG-GCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 10641 0.7 0.575754
Target:  5'- gGCGGGGagcggcGCGAGCCCGAcGAgCGucuGGAGc -3'
miRNA:   3'- -CGCCCU------CGCUCGGGCU-CUgGC---UCUCc -5'
11141 5' -60.5 NC_002794.1 + 139996 0.7 0.575754
Target:  5'- cGCGGGAcgguGCGGG-UgGAGGCCGcGGAGGc -3'
miRNA:   3'- -CGCCCU----CGCUCgGgCUCUGGC-UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 191480 0.7 0.593871
Target:  5'- aGCGGcagccacGGGCGAucGUCCGccACCGAGAGGu -3'
miRNA:   3'- -CGCC-------CUCGCU--CGGGCucUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 140202 0.7 0.604404
Target:  5'- uCGaGGGGCGA-CCCG-GGCCG-GAGGa -3'
miRNA:   3'- cGC-CCUCGCUcGGGCuCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 115592 0.7 0.585276
Target:  5'- aGCGGcuGCGGucgacccgcucGCCCGGcGCCGGGAGGc -3'
miRNA:   3'- -CGCCcuCGCU-----------CGGGCUcUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 175726 0.7 0.604404
Target:  5'- gGCGaGGAGCGuGGCCgUGAGAgCGAGucuguGGa -3'
miRNA:   3'- -CGC-CCUCGC-UCGG-GCUCUgGCUCu----CC- -5'
11141 5' -60.5 NC_002794.1 + 178838 0.71 0.510375
Target:  5'- cGCGGGucucGCGuGCCCcGGACCGAGc-- -3'
miRNA:   3'- -CGCCCu---CGCuCGGGcUCUGGCUCucc -5'
11141 5' -60.5 NC_002794.1 + 178792 0.71 0.510375
Target:  5'- gGCGGGAagGCG-GCUCG-GcCCGGGGGGa -3'
miRNA:   3'- -CGCCCU--CGCuCGGGCuCuGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 116016 0.71 0.510375
Target:  5'- cGCGGuGGCGAuugGCgCgGGGACCGgAGAGGa -3'
miRNA:   3'- -CGCCcUCGCU---CG-GgCUCUGGC-UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 187951 0.71 0.556822
Target:  5'- uGCGcGcGCGAGCgCGGGACCucGGGAGGc -3'
miRNA:   3'- -CGCcCuCGCUCGgGCUCUGG--CUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 141425 0.71 0.547421
Target:  5'- uCGGGGGCGgcgggGGCgCCGGGggcGCCGGGAGcGg -3'
miRNA:   3'- cGCCCUCGC-----UCG-GGCUC---UGGCUCUC-C- -5'
11141 5' -60.5 NC_002794.1 + 115986 0.72 0.492244
Target:  5'- -gGGGAGCGGcGCCgCgGAGACCGcGGAGa -3'
miRNA:   3'- cgCCCUCGCU-CGG-G-CUCUGGC-UCUCc -5'
11141 5' -60.5 NC_002794.1 + 32591 0.72 0.474416
Target:  5'- cCGGGGcCGGGgCCGGGGCCGGGgccGGGg -3'
miRNA:   3'- cGCCCUcGCUCgGGCUCUGGCUC---UCC- -5'
11141 5' -60.5 NC_002794.1 + 147136 0.72 0.48329
Target:  5'- gGCGGuucGAGaCGGcCCCGGGGCCGcGAGGg -3'
miRNA:   3'- -CGCC---CUC-GCUcGGGCUCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 149527 0.72 0.456916
Target:  5'- cCGGGAGCGGaCCUGGGGCgGAGGauGGa -3'
miRNA:   3'- cGCCCUCGCUcGGGCUCUGgCUCU--CC- -5'
11141 5' -60.5 NC_002794.1 + 44330 0.73 0.422995
Target:  5'- cGCGGcGGCGAagaagacggcGCCggCGAGACCGAGAGc -3'
miRNA:   3'- -CGCCcUCGCU----------CGG--GCUCUGGCUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.