Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11141 | 5' | -60.5 | NC_002794.1 | + | 21586 | 0.68 | 0.694422 |
Target: 5'- cGCGaccGGGGCGGucuguGCCCGuGacccaccgcgccgucGCCGGGAGGa -3' miRNA: 3'- -CGC---CCUCGCU-----CGGGCuC---------------UGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 126593 | 0.68 | 0.728145 |
Target: 5'- cCGGGAcUGAGCgCCGAGGCCGGc--- -3' miRNA: 3'- cGCCCUcGCUCG-GGCUCUGGCUcucc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 110278 | 0.68 | 0.69915 |
Target: 5'- gGCGGccGCcguccucGGGCCCGAGAgCCGcGGGGa -3' miRNA: 3'- -CGCCcuCG-------CUCGGGCUCU-GGCuCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 51284 | 0.68 | 0.684934 |
Target: 5'- cGCGGcccgcccgaacGGGCaGGCUCGAaccggucuagaagacGACCGGGAGGa -3' miRNA: 3'- -CGCC-----------CUCGcUCGGGCU---------------CUGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 98905 | 0.68 | 0.713253 |
Target: 5'- cGCGGucucgacgacuucauGAGCGGGCUgGGcgcGGCCGGGaAGGg -3' miRNA: 3'- -CGCC---------------CUCGCUCGGgCU---CUGGCUC-UCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 111089 | 0.68 | 0.681128 |
Target: 5'- gGCaGGGucGGCGGGCCCGgcgGGACCGu--GGc -3' miRNA: 3'- -CG-CCC--UCGCUCGGGC---UCUGGCucuCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 42608 | 0.68 | 0.718858 |
Target: 5'- cCGGGAGCGGGCUcucuCGAcGACCGcgcucucacagcGGAGu -3' miRNA: 3'- cGCCCUCGCUCGG----GCU-CUGGC------------UCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 142915 | 0.68 | 0.72722 |
Target: 5'- cCGGGGGCcgGAGCagGAuguagaagcagguGGCCGAGGGGa -3' miRNA: 3'- cGCCCUCG--CUCGggCU-------------CUGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 94416 | 0.68 | 0.700094 |
Target: 5'- gGUGuGGGGCGcGCCCGAcaACCuGGAGGc -3' miRNA: 3'- -CGC-CCUCGCuCGGGCUc-UGGcUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 40446 | 0.67 | 0.737359 |
Target: 5'- aGUGGGAGCGAuGCCCcGGGCgcugucccuuCGGGcGGc -3' miRNA: 3'- -CGCCCUCGCU-CGGGcUCUG----------GCUCuCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 86098 | 0.67 | 0.785528 |
Target: 5'- cCGGGAcggaugcuccggccCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3' miRNA: 3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 110619 | 0.67 | 0.782067 |
Target: 5'- aGCGGGAGCcgcGGCgCCGcGGCgGcGGGGu -3' miRNA: 3'- -CGCCCUCGc--UCG-GGCuCUGgCuCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 70739 | 0.67 | 0.782067 |
Target: 5'- cCaGGAgcagcGCGAGCCCGGGaaacaGCUGGGAGa -3' miRNA: 3'- cGcCCU-----CGCUCGGGCUC-----UGGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 128229 | 0.67 | 0.782067 |
Target: 5'- ---cGAGCGAGCgCCGuGACgGAGAcGGu -3' miRNA: 3'- cgccCUCGCUCG-GGCuCUGgCUCU-CC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 17443 | 0.67 | 0.782067 |
Target: 5'- cCGGcGcuCGGGCCCGcGACCGAGGu- -3' miRNA: 3'- cGCC-CucGCUCGGGCuCUGGCUCUcc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 101601 | 0.67 | 0.773333 |
Target: 5'- gGCGGGuGCcGGCCCGccGGgCGGGGGu -3' miRNA: 3'- -CGCCCuCGcUCGGGCu-CUgGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 158443 | 0.67 | 0.764487 |
Target: 5'- gGCGGGuucCGcGCUCuucGGGCCGGGAGGu -3' miRNA: 3'- -CGCCCuc-GCuCGGGc--UCUGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 86242 | 0.67 | 0.785528 |
Target: 5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3' miRNA: 3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 95761 | 0.67 | 0.737359 |
Target: 5'- cGCGGGgcGGCG-GCCgCGAcggcggccgGGgCGAGAGGc -3' miRNA: 3'- -CGCCC--UCGCuCGG-GCU---------CUgGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 146507 | 0.67 | 0.737359 |
Target: 5'- uCGcGGAGCcccuGCUCGGGACCGcgacggauccGGAGGa -3' miRNA: 3'- cGC-CCUCGcu--CGGGCUCUGGC----------UCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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