miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 115846 0.78 0.212045
Target:  5'- gGCGGGcuCGGGCCUGGGACgcgCGAGGGGu -3'
miRNA:   3'- -CGCCCucGCUCGGGCUCUG---GCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 101571 0.78 0.222055
Target:  5'- gGCGGGAGUGccGGCcgCCGcGGCCGGGGGGg -3'
miRNA:   3'- -CGCCCUCGC--UCG--GGCuCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 108452 0.77 0.242732
Target:  5'- cGCGGcGGCG-GCCCGccggcacGGGCCGAGGGGc -3'
miRNA:   3'- -CGCCcUCGCuCGGGC-------UCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 101685 0.77 0.243282
Target:  5'- gGCGGaGcGCGAGCCCGAG-CCGGcgcccGAGGa -3'
miRNA:   3'- -CGCC-CuCGCUCGGGCUCuGGCU-----CUCC- -5'
11141 5' -60.5 NC_002794.1 + 94023 0.77 0.253944
Target:  5'- gGCGGGuuccgccGGCGGGCCCGAGAgCGGcggcggugcGGGGg -3'
miRNA:   3'- -CGCCC-------UCGCUCGGGCUCUgGCU---------CUCC- -5'
11141 5' -60.5 NC_002794.1 + 145327 0.77 0.268553
Target:  5'- gGCGGGcggcgcucgggcccgAGCGGGCCCGAG-CUGGGGGu -3'
miRNA:   3'- -CGCCC---------------UCGCUCGGGCUCuGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 124147 0.75 0.338029
Target:  5'- cCGGGAGCGgucuccgcggGGCCCGGGAgagcguCgGGGAGGg -3'
miRNA:   3'- cGCCCUCGC----------UCGGGCUCU------GgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 105826 0.75 0.352519
Target:  5'- cCGGGucGGuCGAGCgagCGGGACCGAGGGGa -3'
miRNA:   3'- cGCCC--UC-GCUCGg--GCUCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 44580 0.74 0.3743
Target:  5'- cGCGGGAcCGAGCCaccgccgccuucuUGGGcGCCGAGGGGc -3'
miRNA:   3'- -CGCCCUcGCUCGG-------------GCUC-UGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 14564 0.74 0.375067
Target:  5'- cGCGGGAGgCGAGCCgGccGACCGaAGcGGg -3'
miRNA:   3'- -CGCCCUC-GCUCGGgCu-CUGGC-UCuCC- -5'
11141 5' -60.5 NC_002794.1 + 183426 0.74 0.375067
Target:  5'- aGCGGGAGCGGGagCGGGACCGGc--- -3'
miRNA:   3'- -CGCCCUCGCUCggGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 115933 0.74 0.380466
Target:  5'- gGCGGcGGGCcGGCCCGccgcgugucgccggGGACCGuGGGGg -3'
miRNA:   3'- -CGCC-CUCGcUCGGGC--------------UCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 40070 0.74 0.382796
Target:  5'- cGgGGGAGgGAaaCCGGGGCgGGGAGGg -3'
miRNA:   3'- -CgCCCUCgCUcgGGCUCUGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 120995 0.74 0.39857
Target:  5'- aGCGGcGGCGGGCCau-GGCCGAGGGu -3'
miRNA:   3'- -CGCCcUCGCUCGGgcuCUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 149671 0.74 0.39857
Target:  5'- aGCGGGGGCGcgucgcGCUCGAcuGGCCGcGGGGg -3'
miRNA:   3'- -CGCCCUCGCu-----CGGGCU--CUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 44330 0.73 0.422995
Target:  5'- cGCGGcGGCGAagaagacggcGCCggCGAGACCGAGAGc -3'
miRNA:   3'- -CGCCcUCGCU----------CGG--GCUCUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 149527 0.72 0.456916
Target:  5'- cCGGGAGCGGaCCUGGGGCgGAGGauGGa -3'
miRNA:   3'- cGCCCUCGCUcGGGCUCUGgCUCU--CC- -5'
11141 5' -60.5 NC_002794.1 + 32591 0.72 0.474416
Target:  5'- cCGGGGcCGGGgCCGGGGCCGGGgccGGGg -3'
miRNA:   3'- cGCCCUcGCUCgGGCUCUGGCUC---UCC- -5'
11141 5' -60.5 NC_002794.1 + 147136 0.72 0.48329
Target:  5'- gGCGGuucGAGaCGGcCCCGGGGCCGcGAGGg -3'
miRNA:   3'- -CGCC---CUC-GCUcGGGCUCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 115986 0.72 0.492244
Target:  5'- -gGGGAGCGGcGCCgCgGAGACCGcGGAGa -3'
miRNA:   3'- cgCCCUCGCU-CGG-G-CUCUGGC-UCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.