miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 94416 0.68 0.700094
Target:  5'- gGUGuGGGGCGcGCCCGAcaACCuGGAGGc -3'
miRNA:   3'- -CGC-CCUCGCuCGGGCUc-UGGcUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 104449 0.68 0.709504
Target:  5'- cGCGG--GCG-GCCCGAGcCCGGGcGGc -3'
miRNA:   3'- -CGCCcuCGCuCGGGCUCuGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 98905 0.68 0.713253
Target:  5'- cGCGGucucgacgacuucauGAGCGGGCUgGGcgcGGCCGGGaAGGg -3'
miRNA:   3'- -CGCC---------------CUCGCUCGGgCU---CUGGCUC-UCC- -5'
11141 5' -60.5 NC_002794.1 + 42608 0.68 0.718858
Target:  5'- cCGGGAGCGGGCUcucuCGAcGACCGcgcucucacagcGGAGu -3'
miRNA:   3'- cGCCCUCGCUCGG----GCU-CUGGC------------UCUCc -5'
11141 5' -60.5 NC_002794.1 + 145908 0.68 0.718858
Target:  5'- cGgGGGAGuCGAccGCgCCGAG-CgGAGGGGc -3'
miRNA:   3'- -CgCCCUC-GCU--CG-GGCUCuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 20406 0.68 0.725366
Target:  5'- cCGGGAGCGGGgccacacggucuacCCCGc-GCCG-GAGGa -3'
miRNA:   3'- cGCCCUCGCUC--------------GGGCucUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 142915 0.68 0.72722
Target:  5'- cCGGGGGCcgGAGCagGAuguagaagcagguGGCCGAGGGGa -3'
miRNA:   3'- cGCCCUCG--CUCGggCU-------------CUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 126593 0.68 0.728145
Target:  5'- cCGGGAcUGAGCgCCGAGGCCGGc--- -3'
miRNA:   3'- cGCCCUcGCUCG-GGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 7823 0.68 0.728145
Target:  5'- aGCGGGAGgGggGGCCguccauCGGGACgGGGGGu -3'
miRNA:   3'- -CGCCCUCgC--UCGG------GCUCUGgCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 146507 0.67 0.737359
Target:  5'- uCGcGGAGCcccuGCUCGGGACCGcgacggauccGGAGGa -3'
miRNA:   3'- cGC-CCUCGcu--CGGGCUCUGGC----------UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 95761 0.67 0.737359
Target:  5'- cGCGGGgcGGCG-GCCgCGAcggcggccgGGgCGAGAGGc -3'
miRNA:   3'- -CGCCC--UCGCuCGG-GCU---------CUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 40627 0.67 0.737359
Target:  5'- cGCGGaGuccGCGAGCgCGAG-CUGAGcGGg -3'
miRNA:   3'- -CGCC-Cu--CGCUCGgGCUCuGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 40446 0.67 0.737359
Target:  5'- aGUGGGAGCGAuGCCCcGGGCgcugucccuuCGGGcGGc -3'
miRNA:   3'- -CGCCCUCGCU-CGGGcUCUG----------GCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 126669 0.67 0.746493
Target:  5'- aCGGGccgcGGCGAggGCCCGAauCgGGGAGGg -3'
miRNA:   3'- cGCCC----UCGCU--CGGGCUcuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 183160 0.67 0.746493
Target:  5'- cGCGGccGGGCu-GCCCGAG-CCGGucGGGGa -3'
miRNA:   3'- -CGCC--CUCGcuCGGGCUCuGGCU--CUCC- -5'
11141 5' -60.5 NC_002794.1 + 50586 0.67 0.746493
Target:  5'- cGCGGcGGCuGGGUggCCGGcGCCGGGGGGa -3'
miRNA:   3'- -CGCCcUCG-CUCG--GGCUcUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 64822 0.67 0.746493
Target:  5'- gGCGGcGAGCcGGCgCCGAcGACCG-GAcGGc -3'
miRNA:   3'- -CGCC-CUCGcUCG-GGCU-CUGGCuCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 149355 0.67 0.746493
Target:  5'- cGCGGGGGCGuGGaCgGAGuccGCCGAGAa- -3'
miRNA:   3'- -CGCCCUCGC-UCgGgCUC---UGGCUCUcc -5'
11141 5' -60.5 NC_002794.1 + 143340 0.67 0.752834
Target:  5'- uCGGGcAGCGGGCUCGggcgauaggggaucAGGgUGAGGGGc -3'
miRNA:   3'- cGCCC-UCGCUCGGGC--------------UCUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 31997 0.67 0.755538
Target:  5'- uGCGuGGGCGAGCCgaCGcAGACCaggcAGGGGa -3'
miRNA:   3'- -CGCcCUCGCUCGG--GC-UCUGGc---UCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.