miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 100548 0.66 0.790682
Target:  5'- aGCGGGcGGCcuucCCCGuGGCCGAGcGGc -3'
miRNA:   3'- -CGCCC-UCGcuc-GGGCuCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 86434 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86602 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86242 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86098 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggccCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 17443 0.67 0.782067
Target:  5'- cCGGcGcuCGGGCCCGcGACCGAGGu- -3'
miRNA:   3'- cGCC-CucGCUCGGGCuCUGGCUCUcc -5'
11141 5' -60.5 NC_002794.1 + 128229 0.67 0.782067
Target:  5'- ---cGAGCGAGCgCCGuGACgGAGAcGGu -3'
miRNA:   3'- cgccCUCGCUCG-GGCuCUGgCUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 70739 0.67 0.782067
Target:  5'- cCaGGAgcagcGCGAGCCCGGGaaacaGCUGGGAGa -3'
miRNA:   3'- cGcCCU-----CGCUCGGGCUC-----UGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 110619 0.67 0.782067
Target:  5'- aGCGGGAGCcgcGGCgCCGcGGCgGcGGGGu -3'
miRNA:   3'- -CGCCCUCGc--UCG-GGCuCUGgCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 101601 0.67 0.773333
Target:  5'- gGCGGGuGCcGGCCCGccGGgCGGGGGu -3'
miRNA:   3'- -CGCCCuCGcUCGGGCu-CUgGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 87038 0.67 0.764487
Target:  5'- cCGGGgaccGGCGcGGCUCGGGGCCGGGu-- -3'
miRNA:   3'- cGCCC----UCGC-UCGGGCUCUGGCUCucc -5'
11141 5' -60.5 NC_002794.1 + 158443 0.67 0.764487
Target:  5'- gGCGGGuucCGcGCUCuucGGGCCGGGAGGu -3'
miRNA:   3'- -CGCCCuc-GCuCGGGc--UCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 136516 0.67 0.763597
Target:  5'- aGCGGGgcgaGGUagagaugguugaaGAGCCCGAGcACCGGGuacucgucucgcAGGu -3'
miRNA:   3'- -CGCCC----UCG-------------CUCGGGCUC-UGGCUC------------UCC- -5'
11141 5' -60.5 NC_002794.1 + 113490 0.67 0.755538
Target:  5'- uGCaGGAGCucGCgCGcGGCCGAGAGc -3'
miRNA:   3'- -CGcCCUCGcuCGgGCuCUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 94277 0.67 0.755538
Target:  5'- uGCGcGGcGCG-GCCCGAG--CGGGGGGc -3'
miRNA:   3'- -CGC-CCuCGCuCGGGCUCugGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 31997 0.67 0.755538
Target:  5'- uGCGuGGGCGAGCCgaCGcAGACCaggcAGGGGa -3'
miRNA:   3'- -CGCcCUCGCUCGG--GC-UCUGGc---UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 143340 0.67 0.752834
Target:  5'- uCGGGcAGCGGGCUCGggcgauaggggaucAGGgUGAGGGGc -3'
miRNA:   3'- cGCCC-UCGCUCGGGC--------------UCUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 50586 0.67 0.746493
Target:  5'- cGCGGcGGCuGGGUggCCGGcGCCGGGGGGa -3'
miRNA:   3'- -CGCCcUCG-CUCG--GGCUcUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 183160 0.67 0.746493
Target:  5'- cGCGGccGGGCu-GCCCGAG-CCGGucGGGGa -3'
miRNA:   3'- -CGCC--CUCGcuCGGGCUCuGGCU--CUCC- -5'
11141 5' -60.5 NC_002794.1 + 149355 0.67 0.746493
Target:  5'- cGCGGGGGCGuGGaCgGAGuccGCCGAGAa- -3'
miRNA:   3'- -CGCCCUCGC-UCgGgCUC---UGGCUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.