miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 49739 0.69 0.642827
Target:  5'- cGUGGuGGCGAGCCCGuAGGCCGc---- -3'
miRNA:   3'- -CGCCcUCGCUCGGGC-UCUGGCucucc -5'
11141 5' -60.5 NC_002794.1 + 50586 0.67 0.746493
Target:  5'- cGCGGcGGCuGGGUggCCGGcGCCGGGGGGa -3'
miRNA:   3'- -CGCCcUCG-CUCG--GGCUcUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 51284 0.68 0.684934
Target:  5'- cGCGGcccgcccgaacGGGCaGGCUCGAaccggucuagaagacGACCGGGAGGa -3'
miRNA:   3'- -CGCC-----------CUCGcUCGGGCU---------------CUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 55342 0.69 0.652431
Target:  5'- cCGGGGuCGcGCCCGAGgcgGCCGAGGcGGc -3'
miRNA:   3'- cGCCCUcGCuCGGGCUC---UGGCUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 64822 0.67 0.746493
Target:  5'- gGCGGcGAGCcGGCgCCGAcGACCG-GAcGGc -3'
miRNA:   3'- -CGCC-CUCGcUCG-GGCU-CUGGCuCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 70739 0.67 0.782067
Target:  5'- cCaGGAgcagcGCGAGCCCGGGaaacaGCUGGGAGa -3'
miRNA:   3'- cGcCCU-----CGCUCGGGCUC-----UGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 86098 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggccCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86242 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86434 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 86602 0.67 0.785528
Target:  5'- cCGGGAcggaugcuccggcuCGAGCCCGAccggaugcuccgGACCGAGccGGGa -3'
miRNA:   3'- cGCCCUc-------------GCUCGGGCU------------CUGGCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 87038 0.67 0.764487
Target:  5'- cCGGGgaccGGCGcGGCUCGGGGCCGGGu-- -3'
miRNA:   3'- cGCCC----UCGC-UCGGGCUCUGGCUCucc -5'
11141 5' -60.5 NC_002794.1 + 87098 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87140 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87182 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 87224 0.66 0.802531
Target:  5'- gGUGGGGGUGcAGgCCGggcgggugggggugcAGGCCGGGcGGg -3'
miRNA:   3'- -CGCCCUCGC-UCgGGC---------------UCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 92318 0.66 0.823813
Target:  5'- cGCGGGcGGCGggGGCCCGGG--CGGGcGGc -3'
miRNA:   3'- -CGCCC-UCGC--UCGGGCUCugGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 94023 0.77 0.253944
Target:  5'- gGCGGGuuccgccGGCGGGCCCGAGAgCGGcggcggugcGGGGg -3'
miRNA:   3'- -CGCCC-------UCGCUCGGGCUCUgGCU---------CUCC- -5'
11141 5' -60.5 NC_002794.1 + 94277 0.67 0.755538
Target:  5'- uGCGcGGcGCG-GCCCGAG--CGGGGGGc -3'
miRNA:   3'- -CGC-CCuCGCuCGGGCUCugGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 94416 0.68 0.700094
Target:  5'- gGUGuGGGGCGcGCCCGAcaACCuGGAGGc -3'
miRNA:   3'- -CGC-CCUCGCuCGGGCUc-UGGcUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 95761 0.67 0.737359
Target:  5'- cGCGGGgcGGCG-GCCgCGAcggcggccgGGgCGAGAGGc -3'
miRNA:   3'- -CGCCC--UCGCuCGG-GCU---------CUgGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.