Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11141 | 5' | -60.5 | NC_002794.1 | + | 118665 | 0.66 | 0.831728 |
Target: 5'- cGUGGGcGCGAcGCCCGcGGCCGccgccGGcGGc -3' miRNA: 3'- -CGCCCuCGCU-CGGGCuCUGGC-----UCuCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 120995 | 0.74 | 0.39857 |
Target: 5'- aGCGGcGGCGGGCCau-GGCCGAGGGu -3' miRNA: 3'- -CGCCcUCGCUCGGgcuCUGGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 124147 | 0.75 | 0.338029 |
Target: 5'- cCGGGAGCGgucuccgcggGGCCCGGGAgagcguCgGGGAGGg -3' miRNA: 3'- cGCCCUCGC----------UCGGGCUCU------GgCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 125738 | 0.66 | 0.831728 |
Target: 5'- gGCGGaGGCGGGCCgCGGGACgGcGGccGGc -3' miRNA: 3'- -CGCCcUCGCUCGG-GCUCUGgCuCU--CC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 126593 | 0.68 | 0.728145 |
Target: 5'- cCGGGAcUGAGCgCCGAGGCCGGc--- -3' miRNA: 3'- cGCCCUcGCUCG-GGCUCUGGCUcucc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 126625 | 0.66 | 0.831728 |
Target: 5'- cGCGGcguGAGCGcgaccgggcGCCCGGacgcGCCGAGAGa -3' miRNA: 3'- -CGCC---CUCGCu--------CGGGCUc---UGGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 126669 | 0.67 | 0.746493 |
Target: 5'- aCGGGccgcGGCGAggGCCCGAauCgGGGAGGg -3' miRNA: 3'- cGCCC----UCGCU--CGGGCUcuGgCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 128229 | 0.67 | 0.782067 |
Target: 5'- ---cGAGCGAGCgCCGuGACgGAGAcGGu -3' miRNA: 3'- cgccCUCGCUCG-GGCuCUGgCUCU-CC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 130146 | 0.66 | 0.790682 |
Target: 5'- uGCGcGGcGCGAGCgCGGGAUcacgcgcgCGAGAGc -3' miRNA: 3'- -CGC-CCuCGCUCGgGCUCUG--------GCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 136516 | 0.67 | 0.763597 |
Target: 5'- aGCGGGgcgaGGUagagaugguugaaGAGCCCGAGcACCGGGuacucgucucgcAGGu -3' miRNA: 3'- -CGCCC----UCG-------------CUCGGGCUC-UGGCUC------------UCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 138290 | 0.66 | 0.815744 |
Target: 5'- aGCGGGuGGCGgccuuGGCCCGcacgcuGuCgGGGAGGa -3' miRNA: 3'- -CGCCC-UCGC-----UCGGGCu-----CuGgCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 139996 | 0.7 | 0.575754 |
Target: 5'- cGCGGGAcgguGCGGG-UgGAGGCCGcGGAGGc -3' miRNA: 3'- -CGCCCU----CGCUCgGgCUCUGGC-UCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 140202 | 0.7 | 0.604404 |
Target: 5'- uCGaGGGGCGA-CCCG-GGCCG-GAGGa -3' miRNA: 3'- cGC-CCUCGCUcGGGCuCUGGCuCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 141425 | 0.71 | 0.547421 |
Target: 5'- uCGGGGGCGgcgggGGCgCCGGGggcGCCGGGAGcGg -3' miRNA: 3'- cGCCCUCGC-----UCG-GGCUC---UGGCUCUC-C- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 142915 | 0.68 | 0.72722 |
Target: 5'- cCGGGGGCcgGAGCagGAuguagaagcagguGGCCGAGGGGa -3' miRNA: 3'- cGCCCUCG--CUCGggCU-------------CUGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 143340 | 0.67 | 0.752834 |
Target: 5'- uCGGGcAGCGGGCUCGggcgauaggggaucAGGgUGAGGGGc -3' miRNA: 3'- cGCCC-UCGCUCGGGC--------------UCUgGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 144398 | 0.66 | 0.807528 |
Target: 5'- uGCGaGGAGUgcgucgcgcuGGGCCCGAGcgcccugcugcGCCGAGuGc -3' miRNA: 3'- -CGC-CCUCG----------CUCGGGCUC-----------UGGCUCuCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 145327 | 0.77 | 0.268553 |
Target: 5'- gGCGGGcggcgcucgggcccgAGCGGGCCCGAG-CUGGGGGu -3' miRNA: 3'- -CGCCC---------------UCGCUCGGGCUCuGGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 145908 | 0.68 | 0.718858 |
Target: 5'- cGgGGGAGuCGAccGCgCCGAG-CgGAGGGGc -3' miRNA: 3'- -CgCCCUC-GCU--CG-GGCUCuGgCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 146507 | 0.67 | 0.737359 |
Target: 5'- uCGcGGAGCcccuGCUCGGGACCGcgacggauccGGAGGa -3' miRNA: 3'- cGC-CCUCGcu--CGGGCUCUGGC----------UCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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