miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 191896 0.66 0.815744
Target:  5'- gGCGGGAuCG-GCaCCGGGACCGGc--- -3'
miRNA:   3'- -CGCCCUcGCuCG-GGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 191480 0.7 0.593871
Target:  5'- aGCGGcagccacGGGCGAucGUCCGccACCGAGAGGu -3'
miRNA:   3'- -CGCC-------CUCGCU--CGGGCucUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 187951 0.71 0.556822
Target:  5'- uGCGcGcGCGAGCgCGGGACCucGGGAGGc -3'
miRNA:   3'- -CGCcCuCGCUCGgGCUCUGG--CUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 183426 0.74 0.375067
Target:  5'- aGCGGGAGCGGGagCGGGACCGGc--- -3'
miRNA:   3'- -CGCCCUCGCUCggGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 183160 0.67 0.746493
Target:  5'- cGCGGccGGGCu-GCCCGAG-CCGGucGGGGa -3'
miRNA:   3'- -CGCC--CUCGcuCGGGCUCuGGCU--CUCC- -5'
11141 5' -60.5 NC_002794.1 + 178838 0.71 0.510375
Target:  5'- cGCGGGucucGCGuGCCCcGGACCGAGc-- -3'
miRNA:   3'- -CGCCCu---CGCuCGGGcUCUGGCUCucc -5'
11141 5' -60.5 NC_002794.1 + 178792 0.71 0.510375
Target:  5'- gGCGGGAagGCG-GCUCG-GcCCGGGGGGa -3'
miRNA:   3'- -CGCCCU--CGCuCGGGCuCuGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 175726 0.7 0.604404
Target:  5'- gGCGaGGAGCGuGGCCgUGAGAgCGAGucuguGGa -3'
miRNA:   3'- -CGC-CCUCGC-UCGG-GCUCUgGCUCu----CC- -5'
11141 5' -60.5 NC_002794.1 + 158443 0.67 0.764487
Target:  5'- gGCGGGuucCGcGCUCuucGGGCCGGGAGGu -3'
miRNA:   3'- -CGCCCuc-GCuCGGGc--UCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 149671 0.74 0.39857
Target:  5'- aGCGGGGGCGcgucgcGCUCGAcuGGCCGcGGGGg -3'
miRNA:   3'- -CGCCCUCGCu-----CGGGCU--CUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 149527 0.72 0.456916
Target:  5'- cCGGGAGCGGaCCUGGGGCgGAGGauGGa -3'
miRNA:   3'- cGCCCUCGCUcGGGCUCUGgCUCU--CC- -5'
11141 5' -60.5 NC_002794.1 + 149462 0.66 0.831728
Target:  5'- -aGGGGGCG-GUCgaGGAgCGAGGGGg -3'
miRNA:   3'- cgCCCUCGCuCGGgcUCUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 149355 0.67 0.746493
Target:  5'- cGCGGGGGCGuGGaCgGAGuccGCCGAGAa- -3'
miRNA:   3'- -CGCCCUCGC-UCgGgCUC---UGGCUCUcc -5'
11141 5' -60.5 NC_002794.1 + 148642 0.66 0.790682
Target:  5'- cGCGGcGGCGuGCUCGGcuacgcgccGACCGAGGagcGGa -3'
miRNA:   3'- -CGCCcUCGCuCGGGCU---------CUGGCUCU---CC- -5'
11141 5' -60.5 NC_002794.1 + 147136 0.72 0.48329
Target:  5'- gGCGGuucGAGaCGGcCCCGGGGCCGcGAGGg -3'
miRNA:   3'- -CGCC---CUC-GCUcGGGCUCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 146507 0.67 0.737359
Target:  5'- uCGcGGAGCcccuGCUCGGGACCGcgacggauccGGAGGa -3'
miRNA:   3'- cGC-CCUCGcu--CGGGCUCUGGC----------UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 145908 0.68 0.718858
Target:  5'- cGgGGGAGuCGAccGCgCCGAG-CgGAGGGGc -3'
miRNA:   3'- -CgCCCUC-GCU--CG-GGCUCuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 145327 0.77 0.268553
Target:  5'- gGCGGGcggcgcucgggcccgAGCGGGCCCGAG-CUGGGGGu -3'
miRNA:   3'- -CGCCC---------------UCGCUCGGGCUCuGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 144398 0.66 0.807528
Target:  5'- uGCGaGGAGUgcgucgcgcuGGGCCCGAGcgcccugcugcGCCGAGuGc -3'
miRNA:   3'- -CGC-CCUCG----------CUCGGGCUC-----------UGGCUCuCc -5'
11141 5' -60.5 NC_002794.1 + 143340 0.67 0.752834
Target:  5'- uCGGGcAGCGGGCUCGggcgauaggggaucAGGgUGAGGGGc -3'
miRNA:   3'- cGCCC-UCGCUCGGGC--------------UCUgGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.