miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 142915 0.68 0.72722
Target:  5'- cCGGGGGCcgGAGCagGAuguagaagcagguGGCCGAGGGGa -3'
miRNA:   3'- cGCCCUCG--CUCGggCU-------------CUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 141425 0.71 0.547421
Target:  5'- uCGGGGGCGgcgggGGCgCCGGGggcGCCGGGAGcGg -3'
miRNA:   3'- cGCCCUCGC-----UCG-GGCUC---UGGCUCUC-C- -5'
11141 5' -60.5 NC_002794.1 + 140202 0.7 0.604404
Target:  5'- uCGaGGGGCGA-CCCG-GGCCG-GAGGa -3'
miRNA:   3'- cGC-CCUCGCUcGGGCuCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 139996 0.7 0.575754
Target:  5'- cGCGGGAcgguGCGGG-UgGAGGCCGcGGAGGc -3'
miRNA:   3'- -CGCCCU----CGCUCgGgCUCUGGC-UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 138290 0.66 0.815744
Target:  5'- aGCGGGuGGCGgccuuGGCCCGcacgcuGuCgGGGAGGa -3'
miRNA:   3'- -CGCCC-UCGC-----UCGGGCu-----CuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 136516 0.67 0.763597
Target:  5'- aGCGGGgcgaGGUagagaugguugaaGAGCCCGAGcACCGGGuacucgucucgcAGGu -3'
miRNA:   3'- -CGCCC----UCG-------------CUCGGGCUC-UGGCUC------------UCC- -5'
11141 5' -60.5 NC_002794.1 + 130146 0.66 0.790682
Target:  5'- uGCGcGGcGCGAGCgCGGGAUcacgcgcgCGAGAGc -3'
miRNA:   3'- -CGC-CCuCGCUCGgGCUCUG--------GCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 128229 0.67 0.782067
Target:  5'- ---cGAGCGAGCgCCGuGACgGAGAcGGu -3'
miRNA:   3'- cgccCUCGCUCG-GGCuCUGgCUCU-CC- -5'
11141 5' -60.5 NC_002794.1 + 126669 0.67 0.746493
Target:  5'- aCGGGccgcGGCGAggGCCCGAauCgGGGAGGg -3'
miRNA:   3'- cGCCC----UCGCU--CGGGCUcuGgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 126625 0.66 0.831728
Target:  5'- cGCGGcguGAGCGcgaccgggcGCCCGGacgcGCCGAGAGa -3'
miRNA:   3'- -CGCC---CUCGCu--------CGGGCUc---UGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 126593 0.68 0.728145
Target:  5'- cCGGGAcUGAGCgCCGAGGCCGGc--- -3'
miRNA:   3'- cGCCCUcGCUCG-GGCUCUGGCUcucc -5'
11141 5' -60.5 NC_002794.1 + 125738 0.66 0.831728
Target:  5'- gGCGGaGGCGGGCCgCGGGACgGcGGccGGc -3'
miRNA:   3'- -CGCCcUCGCUCGG-GCUCUGgCuCU--CC- -5'
11141 5' -60.5 NC_002794.1 + 124147 0.75 0.338029
Target:  5'- cCGGGAGCGgucuccgcggGGCCCGGGAgagcguCgGGGAGGg -3'
miRNA:   3'- cGCCCUCGC----------UCGGGCUCU------GgCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 120995 0.74 0.39857
Target:  5'- aGCGGcGGCGGGCCau-GGCCGAGGGu -3'
miRNA:   3'- -CGCCcUCGCUCGGgcuCUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 118665 0.66 0.831728
Target:  5'- cGUGGGcGCGAcGCCCGcGGCCGccgccGGcGGc -3'
miRNA:   3'- -CGCCCuCGCU-CGGGCuCUGGC-----UCuCC- -5'
11141 5' -60.5 NC_002794.1 + 116410 0.7 0.566267
Target:  5'- gGCGGGGcGCGAGCaCCaGGGCgCGGGucAGGa -3'
miRNA:   3'- -CGCCCU-CGCUCG-GGcUCUG-GCUC--UCC- -5'
11141 5' -60.5 NC_002794.1 + 116016 0.71 0.510375
Target:  5'- cGCGGuGGCGAuugGCgCgGGGACCGgAGAGGa -3'
miRNA:   3'- -CGCCcUCGCU---CG-GgCUCUGGC-UCUCC- -5'
11141 5' -60.5 NC_002794.1 + 115986 0.72 0.492244
Target:  5'- -gGGGAGCGGcGCCgCgGAGACCGcGGAGa -3'
miRNA:   3'- cgCCCUCGCU-CGG-G-CUCUGGC-UCUCc -5'
11141 5' -60.5 NC_002794.1 + 115933 0.74 0.380466
Target:  5'- gGCGGcGGGCcGGCCCGccgcgugucgccggGGACCGuGGGGg -3'
miRNA:   3'- -CGCC-CUCGcUCGGGC--------------UCUGGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 115846 0.78 0.212045
Target:  5'- gGCGGGcuCGGGCCUGGGACgcgCGAGGGGu -3'
miRNA:   3'- -CGCCCucGCUCGGGCUCUG---GCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.