miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11141 5' -60.5 NC_002794.1 + 115592 0.7 0.585276
Target:  5'- aGCGGcuGCGGucgacccgcucGCCCGGcGCCGGGAGGc -3'
miRNA:   3'- -CGCCcuCGCU-----------CGGGCUcUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 113490 0.67 0.755538
Target:  5'- uGCaGGAGCucGCgCGcGGCCGAGAGc -3'
miRNA:   3'- -CGcCCUCGcuCGgGCuCUGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 111089 0.68 0.681128
Target:  5'- gGCaGGGucGGCGGGCCCGgcgGGACCGu--GGc -3'
miRNA:   3'- -CG-CCC--UCGCUCGGGC---UCUGGCucuCC- -5'
11141 5' -60.5 NC_002794.1 + 110619 0.67 0.782067
Target:  5'- aGCGGGAGCcgcGGCgCCGcGGCgGcGGGGu -3'
miRNA:   3'- -CGCCCUCGc--UCG-GGCuCUGgCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 110278 0.68 0.69915
Target:  5'- gGCGGccGCcguccucGGGCCCGAGAgCCGcGGGGa -3'
miRNA:   3'- -CGCCcuCG-------CUCGGGCUCU-GGCuCUCC- -5'
11141 5' -60.5 NC_002794.1 + 108452 0.77 0.242732
Target:  5'- cGCGGcGGCG-GCCCGccggcacGGGCCGAGGGGc -3'
miRNA:   3'- -CGCCcUCGCuCGGGC-------UCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 107892 0.68 0.690632
Target:  5'- gGCGGGuGCG-GCugCCGGGuCUGAGGGa -3'
miRNA:   3'- -CGCCCuCGCuCG--GGCUCuGGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 105826 0.75 0.352519
Target:  5'- cCGGGucGGuCGAGCgagCGGGACCGAGGGGa -3'
miRNA:   3'- cGCCC--UC-GCUCGg--GCUCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 104449 0.68 0.709504
Target:  5'- cGCGG--GCG-GCCCGAGcCCGGGcGGc -3'
miRNA:   3'- -CGCCcuCGCuCGGGCUCuGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 101685 0.77 0.243282
Target:  5'- gGCGGaGcGCGAGCCCGAG-CCGGcgcccGAGGa -3'
miRNA:   3'- -CGCC-CuCGCUCGGGCUCuGGCU-----CUCC- -5'
11141 5' -60.5 NC_002794.1 + 101601 0.67 0.773333
Target:  5'- gGCGGGuGCcGGCCCGccGGgCGGGGGu -3'
miRNA:   3'- -CGCCCuCGcUCGGGCu-CUgGCUCUCc -5'
11141 5' -60.5 NC_002794.1 + 101571 0.78 0.222055
Target:  5'- gGCGGGAGUGccGGCcgCCGcGGCCGGGGGGg -3'
miRNA:   3'- -CGCCCUCGC--UCG--GGCuCUGGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 100548 0.66 0.790682
Target:  5'- aGCGGGcGGCcuucCCCGuGGCCGAGcGGc -3'
miRNA:   3'- -CGCCC-UCGcuc-GGGCuCUGGCUCuCC- -5'
11141 5' -60.5 NC_002794.1 + 98905 0.68 0.713253
Target:  5'- cGCGGucucgacgacuucauGAGCGGGCUgGGcgcGGCCGGGaAGGg -3'
miRNA:   3'- -CGCC---------------CUCGCUCGGgCU---CUGGCUC-UCC- -5'
11141 5' -60.5 NC_002794.1 + 95813 0.66 0.805036
Target:  5'- cGgGGGAGCGgcggcGGCCgGGGgagcggcggcggcgGCCGGGgAGGc -3'
miRNA:   3'- -CgCCCUCGC-----UCGGgCUC--------------UGGCUC-UCC- -5'
11141 5' -60.5 NC_002794.1 + 95761 0.67 0.737359
Target:  5'- cGCGGGgcGGCG-GCCgCGAcggcggccgGGgCGAGAGGc -3'
miRNA:   3'- -CGCCC--UCGCuCGG-GCU---------CUgGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 94416 0.68 0.700094
Target:  5'- gGUGuGGGGCGcGCCCGAcaACCuGGAGGc -3'
miRNA:   3'- -CGC-CCUCGCuCGGGCUc-UGGcUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 94277 0.67 0.755538
Target:  5'- uGCGcGGcGCG-GCCCGAG--CGGGGGGc -3'
miRNA:   3'- -CGC-CCuCGCuCGGGCUCugGCUCUCC- -5'
11141 5' -60.5 NC_002794.1 + 94023 0.77 0.253944
Target:  5'- gGCGGGuuccgccGGCGGGCCCGAGAgCGGcggcggugcGGGGg -3'
miRNA:   3'- -CGCCC-------UCGCUCGGGCUCUgGCU---------CUCC- -5'
11141 5' -60.5 NC_002794.1 + 92318 0.66 0.823813
Target:  5'- cGCGGGcGGCGggGGCCCGGG--CGGGcGGc -3'
miRNA:   3'- -CGCCC-UCGC--UCGGGCUCugGCUCuCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.