Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11141 | 5' | -60.5 | NC_002794.1 | + | 40070 | 0.74 | 0.382796 |
Target: 5'- cGgGGGAGgGAaaCCGGGGCgGGGAGGg -3' miRNA: 3'- -CgCCCUCgCUcgGGCUCUGgCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 32591 | 0.72 | 0.474416 |
Target: 5'- cCGGGGcCGGGgCCGGGGCCGGGgccGGGg -3' miRNA: 3'- cGCCCUcGCUCgGGCUCUGGCUC---UCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 31997 | 0.67 | 0.755538 |
Target: 5'- uGCGuGGGCGAGCCgaCGcAGACCaggcAGGGGa -3' miRNA: 3'- -CGCcCUCGCUCGG--GC-UCUGGc---UCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 24380 | 0.66 | 0.831728 |
Target: 5'- aCGGG-GC---CCCGAgGACCGAGAGa -3' miRNA: 3'- cGCCCuCGcucGGGCU-CUGGCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 21586 | 0.68 | 0.694422 |
Target: 5'- cGCGaccGGGGCGGucuguGCCCGuGacccaccgcgccgucGCCGGGAGGa -3' miRNA: 3'- -CGC---CCUCGCU-----CGGGCuC---------------UGGCUCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 20406 | 0.68 | 0.725366 |
Target: 5'- cCGGGAGCGGGgccacacggucuacCCCGc-GCCG-GAGGa -3' miRNA: 3'- cGCCCUCGCUC--------------GGGCucUGGCuCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 17443 | 0.67 | 0.782067 |
Target: 5'- cCGGcGcuCGGGCCCGcGACCGAGGu- -3' miRNA: 3'- cGCC-CucGCUCGGGCuCUGGCUCUcc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 14596 | 0.66 | 0.807528 |
Target: 5'- cGUGGcGAGCGcGCCgggcaccgcgaCGGGGCCgGAGAcGGg -3' miRNA: 3'- -CGCC-CUCGCuCGG-----------GCUCUGG-CUCU-CC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 14564 | 0.74 | 0.375067 |
Target: 5'- cGCGGGAGgCGAGCCgGccGACCGaAGcGGg -3' miRNA: 3'- -CGCCCUC-GCUCGGgCu-CUGGC-UCuCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 10641 | 0.7 | 0.575754 |
Target: 5'- gGCGGGGagcggcGCGAGCCCGAcGAgCGucuGGAGc -3' miRNA: 3'- -CGCCCU------CGCUCGGGCU-CUgGC---UCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 7823 | 0.68 | 0.728145 |
Target: 5'- aGCGGGAGgGggGGCCguccauCGGGACgGGGGGu -3' miRNA: 3'- -CGCCCUCgC--UCGG------GCUCUGgCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 6144 | 0.69 | 0.66202 |
Target: 5'- -gGGGGGCgGAGCCCGAGcaucaacuucACCGucaaAGAcGGa -3' miRNA: 3'- cgCCCUCG-CUCGGGCUC----------UGGC----UCU-CC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 5053 | 0.66 | 0.798329 |
Target: 5'- gGUGGGGccuuugacucaccGacaGGGCCCGAgcgaGACCG-GAGGg -3' miRNA: 3'- -CGCCCU-------------Cg--CUCGGGCU----CUGGCuCUCC- -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 4136 | 0.66 | 0.815744 |
Target: 5'- cCGGGGucuuGCGAGCCCcccGGACgaCGAGGGu -3' miRNA: 3'- cGCCCU----CGCUCGGGc--UCUG--GCUCUCc -5' |
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11141 | 5' | -60.5 | NC_002794.1 | + | 3845 | 0.66 | 0.799172 |
Target: 5'- gGCGGG-GCuuGAGCCCcGGACCGGc--- -3' miRNA: 3'- -CGCCCuCG--CUCGGGcUCUGGCUcucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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