miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11142 3' -52.9 NC_002794.1 + 151877 0.66 0.97873
Target:  5'- aGCCCG-UGGAAGuggcccucgauucGGCgCCCCAGAg-- -3'
miRNA:   3'- gUGGGCaAUCUUU-------------UCG-GGGGUCUguu -5'
11142 3' -52.9 NC_002794.1 + 123915 0.67 0.971161
Target:  5'- cCGCCuCGcgccGGAccuGCCCCCGGGCAc -3'
miRNA:   3'- -GUGG-GCaa--UCUuuuCGGGGGUCUGUu -5'
11142 3' -52.9 NC_002794.1 + 149593 0.67 0.971161
Target:  5'- gCGCCagGUggaccGAGGAGCCCCC-GACGGg -3'
miRNA:   3'- -GUGGg-CAau---CUUUUCGGGGGuCUGUU- -5'
11142 3' -52.9 NC_002794.1 + 4124 0.67 0.967838
Target:  5'- -cCCCGUUcguucccGGGGucuugcGAGcCCCCCGGACGAc -3'
miRNA:   3'- guGGGCAA-------UCUU------UUC-GGGGGUCUGUU- -5'
11142 3' -52.9 NC_002794.1 + 73 0.67 0.957797
Target:  5'- cCACCgGUaacGAAAcGCCCCCgAGGCAc -3'
miRNA:   3'- -GUGGgCAau-CUUUuCGGGGG-UCUGUu -5'
11142 3' -52.9 NC_002794.1 + 118944 0.68 0.953886
Target:  5'- aGCCCGgggugcaGGAAGAGCCgCguGACGGu -3'
miRNA:   3'- gUGGGCaa-----UCUUUUCGGgGguCUGUU- -5'
11142 3' -52.9 NC_002794.1 + 76374 0.69 0.913825
Target:  5'- -cCCCGa-AGAAGAGCCgCCgAGACAAc -3'
miRNA:   3'- guGGGCaaUCUUUUCGG-GGgUCUGUU- -5'
11142 3' -52.9 NC_002794.1 + 120507 0.69 0.907702
Target:  5'- aGCCCGUgGGcAGccugcaggcgguGGCCCCCGGGCu- -3'
miRNA:   3'- gUGGGCAaUCuUU------------UCGGGGGUCUGuu -5'
11142 3' -52.9 NC_002794.1 + 48465 0.7 0.894724
Target:  5'- cCGCCaCGUcAGGgcGAAGCCgCCGGGCAGc -3'
miRNA:   3'- -GUGG-GCAaUCU--UUUCGGgGGUCUGUU- -5'
11142 3' -52.9 NC_002794.1 + 175565 0.7 0.894724
Target:  5'- gACCCGUUGGAAA--CCCgCCGGugGu -3'
miRNA:   3'- gUGGGCAAUCUUUucGGG-GGUCugUu -5'
11142 3' -52.9 NC_002794.1 + 42537 0.71 0.833651
Target:  5'- gGCCCGguccGAAAGCCCCCAcACAc -3'
miRNA:   3'- gUGGGCaaucUUUUCGGGGGUcUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.