Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11142 | 3' | -52.9 | NC_002794.1 | + | 73 | 0.67 | 0.957797 |
Target: 5'- cCACCgGUaacGAAAcGCCCCCgAGGCAc -3' miRNA: 3'- -GUGGgCAau-CUUUuCGGGGG-UCUGUu -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 4124 | 0.67 | 0.967838 |
Target: 5'- -cCCCGUUcguucccGGGGucuugcGAGcCCCCCGGACGAc -3' miRNA: 3'- guGGGCAA-------UCUU------UUC-GGGGGUCUGUU- -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 42537 | 0.71 | 0.833651 |
Target: 5'- gGCCCGguccGAAAGCCCCCAcACAc -3' miRNA: 3'- gUGGGCaaucUUUUCGGGGGUcUGUu -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 48465 | 0.7 | 0.894724 |
Target: 5'- cCGCCaCGUcAGGgcGAAGCCgCCGGGCAGc -3' miRNA: 3'- -GUGG-GCAaUCU--UUUCGGgGGUCUGUU- -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 76374 | 0.69 | 0.913825 |
Target: 5'- -cCCCGa-AGAAGAGCCgCCgAGACAAc -3' miRNA: 3'- guGGGCaaUCUUUUCGG-GGgUCUGUU- -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 118944 | 0.68 | 0.953886 |
Target: 5'- aGCCCGgggugcaGGAAGAGCCgCguGACGGu -3' miRNA: 3'- gUGGGCaa-----UCUUUUCGGgGguCUGUU- -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 120507 | 0.69 | 0.907702 |
Target: 5'- aGCCCGUgGGcAGccugcaggcgguGGCCCCCGGGCu- -3' miRNA: 3'- gUGGGCAaUCuUU------------UCGGGGGUCUGuu -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 123915 | 0.67 | 0.971161 |
Target: 5'- cCGCCuCGcgccGGAccuGCCCCCGGGCAc -3' miRNA: 3'- -GUGG-GCaa--UCUuuuCGGGGGUCUGUu -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 149593 | 0.67 | 0.971161 |
Target: 5'- gCGCCagGUggaccGAGGAGCCCCC-GACGGg -3' miRNA: 3'- -GUGGg-CAau---CUUUUCGGGGGuCUGUU- -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 151877 | 0.66 | 0.97873 |
Target: 5'- aGCCCG-UGGAAGuggcccucgauucGGCgCCCCAGAg-- -3' miRNA: 3'- gUGGGCaAUCUUU-------------UCG-GGGGUCUguu -5' |
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11142 | 3' | -52.9 | NC_002794.1 | + | 175565 | 0.7 | 0.894724 |
Target: 5'- gACCCGUUGGAAA--CCCgCCGGugGu -3' miRNA: 3'- gUGGGCAAUCUUUucGGG-GGUCugUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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