miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11142 5' -60.8 NC_002794.1 + 184910 0.66 0.822885
Target:  5'- aCUCGCgCGGGaacaUCggcaGCCGGCGGUCGu -3'
miRNA:   3'- gGGGUG-GCCCc---AGag--UGGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 111103 0.66 0.822885
Target:  5'- gCCCGgCGGGaccguggccGUCgacggCGCCGGCGGcCGg -3'
miRNA:   3'- gGGGUgGCCC---------CAGa----GUGGCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 143751 0.66 0.814826
Target:  5'- gCgCCGCCGGGGggcuccgCUCGUCGuCGGUg- -3'
miRNA:   3'- -GgGGUGGCCCCa------GAGUGGCuGCCAgu -5'
11142 5' -60.8 NC_002794.1 + 86896 0.66 0.806622
Target:  5'- aUCCCGgCGGGG-C-CGCCGAccCGGUg- -3'
miRNA:   3'- -GGGGUgGCCCCaGaGUGGCU--GCCAgu -5'
11142 5' -60.8 NC_002794.1 + 190011 0.66 0.798279
Target:  5'- gCCCGuCC-GGGUC-CAUCGGCGGcCGg -3'
miRNA:   3'- gGGGU-GGcCCCAGaGUGGCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 58011 0.66 0.798279
Target:  5'- uCgCCGCCGGGGcCgcCGCCGGCGa--- -3'
miRNA:   3'- -GgGGUGGCCCCaGa-GUGGCUGCcagu -5'
11142 5' -60.8 NC_002794.1 + 86853 0.66 0.789805
Target:  5'- gCCCCGCCGggauuGGGUCU-GCCG-CGGc-- -3'
miRNA:   3'- -GGGGUGGC-----CCCAGAgUGGCuGCCagu -5'
11142 5' -60.8 NC_002794.1 + 68552 0.66 0.789805
Target:  5'- gCCgacaaGCUGcGGGUgUCGCCGACGG-CGu -3'
miRNA:   3'- gGGg----UGGC-CCCAgAGUGGCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 155938 0.66 0.788951
Target:  5'- gCCgUCACCGGGGcUCuUCGCCGuccccacACGaGUCGa -3'
miRNA:   3'- -GG-GGUGGCCCC-AG-AGUGGC-------UGC-CAGU- -5'
11142 5' -60.8 NC_002794.1 + 156704 0.66 0.781206
Target:  5'- -gCCGCCGccGUCcCACCGAuCGGUCGu -3'
miRNA:   3'- ggGGUGGCccCAGaGUGGCU-GCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 47739 0.66 0.781206
Target:  5'- gCCCGCC-GGGUC-CACgUGGCGGcCGu -3'
miRNA:   3'- gGGGUGGcCCCAGaGUG-GCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 154259 0.66 0.781206
Target:  5'- aCUUggACCGGGGUCUggucccgacCGCCGgcgcggcucgACGGUCGa -3'
miRNA:   3'- gGGG--UGGCCCCAGA---------GUGGC----------UGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 149274 0.67 0.772491
Target:  5'- uCCCCGCCGGcGGcgcggcggCUCGCUcACGGg-- -3'
miRNA:   3'- -GGGGUGGCC-CCa-------GAGUGGcUGCCagu -5'
11142 5' -60.8 NC_002794.1 + 138818 0.67 0.772491
Target:  5'- aCCCCGCCGcGGUCUCGagcucgCGACcGGg-- -3'
miRNA:   3'- -GGGGUGGCcCCAGAGUg-----GCUG-CCagu -5'
11142 5' -60.8 NC_002794.1 + 112301 0.67 0.772491
Target:  5'- gCCCC-CCGGGuccgacuUCggCGCCGACGG-CGg -3'
miRNA:   3'- -GGGGuGGCCCc------AGa-GUGGCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 176401 0.67 0.763665
Target:  5'- -gCCACCuGGGUCaCACgagaugUGACGGUCGa -3'
miRNA:   3'- ggGGUGGcCCCAGaGUG------GCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 30063 0.67 0.736605
Target:  5'- gCCCG-CGGGGUCcggUCGCC--CGGUCGa -3'
miRNA:   3'- gGGGUgGCCCCAG---AGUGGcuGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 17264 0.67 0.727415
Target:  5'- aCCCGgcucgucacCCGGGcaCgccgcCGCCGACGGUCAc -3'
miRNA:   3'- gGGGU---------GGCCCcaGa----GUGGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 85985 0.67 0.727415
Target:  5'- -aCCGCCGcGGcCcCGCCGACGGUUc -3'
miRNA:   3'- ggGGUGGCcCCaGaGUGGCUGCCAGu -5'
11142 5' -60.8 NC_002794.1 + 78189 0.68 0.708828
Target:  5'- gCCCCGCCGuacGGUC-CuuuCCGcACGGUCc -3'
miRNA:   3'- -GGGGUGGCc--CCAGaGu--GGC-UGCCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.