miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11142 5' -60.8 NC_002794.1 + 121502 0.77 0.260932
Target:  5'- cCUCCGCCGGGGcgacgacgUCcgaACCGGCGGUCGu -3'
miRNA:   3'- -GGGGUGGCCCC--------AGag-UGGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 96741 0.75 0.303637
Target:  5'- -aCCGCCGGcGcGUCUCgcaagcgGCCGGCGGUCGa -3'
miRNA:   3'- ggGGUGGCC-C-CAGAG-------UGGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 138493 0.74 0.360371
Target:  5'- gUCCCGgCGGGGUUcaugUCGCCGGuccCGGUCGc -3'
miRNA:   3'- -GGGGUgGCCCCAG----AGUGGCU---GCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 180908 0.74 0.367868
Target:  5'- aCUCgGCCGcGGUCUCGCCGGCGccGUCGg -3'
miRNA:   3'- -GGGgUGGCcCCAGAGUGGCUGC--CAGU- -5'
11142 5' -60.8 NC_002794.1 + 99452 0.73 0.423265
Target:  5'- uCCgCCGCCGGGGg--UAUCGGCGGcUCAg -3'
miRNA:   3'- -GG-GGUGGCCCCagaGUGGCUGCC-AGU- -5'
11142 5' -60.8 NC_002794.1 + 193722 0.72 0.448489
Target:  5'- gCCCCGCCGGuGUcCUCGCCGcccGCGGcuUCGg -3'
miRNA:   3'- -GGGGUGGCCcCA-GAGUGGC---UGCC--AGU- -5'
11142 5' -60.8 NC_002794.1 + 53852 0.72 0.46576
Target:  5'- gUCUCGgCGGGGuUCUCGaCGACGGUCu -3'
miRNA:   3'- -GGGGUgGCCCC-AGAGUgGCUGCCAGu -5'
11142 5' -60.8 NC_002794.1 + 137602 0.72 0.474524
Target:  5'- gCCgCCGCCGGcGGUCgCGgCGGCGGUg- -3'
miRNA:   3'- -GG-GGUGGCC-CCAGaGUgGCUGCCAgu -5'
11142 5' -60.8 NC_002794.1 + 5792 0.71 0.519502
Target:  5'- ---aGCCGGGGUCUgACCGuCGGUgAg -3'
miRNA:   3'- ggggUGGCCCCAGAgUGGCuGCCAgU- -5'
11142 5' -60.8 NC_002794.1 + 191657 0.71 0.537966
Target:  5'- gCCCGCCGGGGgacggCGCCGgcaGCGG-CGg -3'
miRNA:   3'- gGGGUGGCCCCaga--GUGGC---UGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 4150 0.71 0.544483
Target:  5'- gCCCC-CCggacgacgaggguaGGGGUCgUCGCgGugGGUCGu -3'
miRNA:   3'- -GGGGuGG--------------CCCCAG-AGUGgCugCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 30111 0.7 0.578361
Target:  5'- aCCCACCGcccGGGUUuucuccucacccccgUCccgacccACCGGCGGUCAg -3'
miRNA:   3'- gGGGUGGC---CCCAG---------------AG-------UGGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 183662 0.69 0.613629
Target:  5'- uCCgCGCCGGGccCgagCGCCGACgGGUCGa -3'
miRNA:   3'- -GGgGUGGCCCcaGa--GUGGCUG-CCAGU- -5'
11142 5' -60.8 NC_002794.1 + 41337 0.69 0.642361
Target:  5'- uCUCCuCCGGGGUCUCcggggucaccGCCGuCGGcCu -3'
miRNA:   3'- -GGGGuGGCCCCAGAG----------UGGCuGCCaGu -5'
11142 5' -60.8 NC_002794.1 + 189834 0.69 0.642361
Target:  5'- aCCgCCACagCGGGGUCUCGgCCG-CGGa-- -3'
miRNA:   3'- -GG-GGUG--GCCCCAGAGU-GGCuGCCagu -5'
11142 5' -60.8 NC_002794.1 + 26071 0.68 0.690012
Target:  5'- cCCCCGCgcacgccacgCGGGGcagCGCCGACGGcCc -3'
miRNA:   3'- -GGGGUG----------GCCCCagaGUGGCUGCCaGu -5'
11142 5' -60.8 NC_002794.1 + 138752 0.68 0.699445
Target:  5'- gCCCuCCGGGGgccgagUCG-CGGCGGUCGg -3'
miRNA:   3'- gGGGuGGCCCCag----AGUgGCUGCCAGU- -5'
11142 5' -60.8 NC_002794.1 + 61513 0.68 0.708828
Target:  5'- gCCCGCCGGacGG-CggcCGCCGGCGGcCGc -3'
miRNA:   3'- gGGGUGGCC--CCaGa--GUGGCUGCCaGU- -5'
11142 5' -60.8 NC_002794.1 + 78189 0.68 0.708828
Target:  5'- gCCCCGCCGuacGGUC-CuuuCCGcACGGUCc -3'
miRNA:   3'- -GGGGUGGCc--CCAGaGu--GGC-UGCCAGu -5'
11142 5' -60.8 NC_002794.1 + 17264 0.67 0.727415
Target:  5'- aCCCGgcucgucacCCGGGcaCgccgcCGCCGACGGUCAc -3'
miRNA:   3'- gGGGU---------GGCCCcaGa----GUGGCUGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.