Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11142 | 5' | -60.8 | NC_002794.1 | + | 4150 | 0.71 | 0.544483 |
Target: 5'- gCCCC-CCggacgacgaggguaGGGGUCgUCGCgGugGGUCGu -3' miRNA: 3'- -GGGGuGG--------------CCCCAG-AGUGgCugCCAGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 5792 | 0.71 | 0.519502 |
Target: 5'- ---aGCCGGGGUCUgACCGuCGGUgAg -3' miRNA: 3'- ggggUGGCCCCAGAgUGGCuGCCAgU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 17264 | 0.67 | 0.727415 |
Target: 5'- aCCCGgcucgucacCCGGGcaCgccgcCGCCGACGGUCAc -3' miRNA: 3'- gGGGU---------GGCCCcaGa----GUGGCUGCCAGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 26071 | 0.68 | 0.690012 |
Target: 5'- cCCCCGCgcacgccacgCGGGGcagCGCCGACGGcCc -3' miRNA: 3'- -GGGGUG----------GCCCCagaGUGGCUGCCaGu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 30063 | 0.67 | 0.736605 |
Target: 5'- gCCCG-CGGGGUCcggUCGCC--CGGUCGa -3' miRNA: 3'- gGGGUgGCCCCAG---AGUGGcuGCCAGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 30111 | 0.7 | 0.578361 |
Target: 5'- aCCCACCGcccGGGUUuucuccucacccccgUCccgacccACCGGCGGUCAg -3' miRNA: 3'- gGGGUGGC---CCCAG---------------AG-------UGGCUGCCAGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 41337 | 0.69 | 0.642361 |
Target: 5'- uCUCCuCCGGGGUCUCcggggucaccGCCGuCGGcCu -3' miRNA: 3'- -GGGGuGGCCCCAGAG----------UGGCuGCCaGu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 47739 | 0.66 | 0.781206 |
Target: 5'- gCCCGCC-GGGUC-CACgUGGCGGcCGu -3' miRNA: 3'- gGGGUGGcCCCAGaGUG-GCUGCCaGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 53852 | 0.72 | 0.46576 |
Target: 5'- gUCUCGgCGGGGuUCUCGaCGACGGUCu -3' miRNA: 3'- -GGGGUgGCCCC-AGAGUgGCUGCCAGu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 58011 | 0.66 | 0.798279 |
Target: 5'- uCgCCGCCGGGGcCgcCGCCGGCGa--- -3' miRNA: 3'- -GgGGUGGCCCCaGa-GUGGCUGCcagu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 61513 | 0.68 | 0.708828 |
Target: 5'- gCCCGCCGGacGG-CggcCGCCGGCGGcCGc -3' miRNA: 3'- gGGGUGGCC--CCaGa--GUGGCUGCCaGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 68552 | 0.66 | 0.789805 |
Target: 5'- gCCgacaaGCUGcGGGUgUCGCCGACGG-CGu -3' miRNA: 3'- gGGg----UGGC-CCCAgAGUGGCUGCCaGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 78189 | 0.68 | 0.708828 |
Target: 5'- gCCCCGCCGuacGGUC-CuuuCCGcACGGUCc -3' miRNA: 3'- -GGGGUGGCc--CCAGaGu--GGC-UGCCAGu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 85985 | 0.67 | 0.727415 |
Target: 5'- -aCCGCCGcGGcCcCGCCGACGGUUc -3' miRNA: 3'- ggGGUGGCcCCaGaGUGGCUGCCAGu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 86853 | 0.66 | 0.789805 |
Target: 5'- gCCCCGCCGggauuGGGUCU-GCCG-CGGc-- -3' miRNA: 3'- -GGGGUGGC-----CCCAGAgUGGCuGCCagu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 86896 | 0.66 | 0.806622 |
Target: 5'- aUCCCGgCGGGG-C-CGCCGAccCGGUg- -3' miRNA: 3'- -GGGGUgGCCCCaGaGUGGCU--GCCAgu -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 96741 | 0.75 | 0.303637 |
Target: 5'- -aCCGCCGGcGcGUCUCgcaagcgGCCGGCGGUCGa -3' miRNA: 3'- ggGGUGGCC-C-CAGAG-------UGGCUGCCAGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 99452 | 0.73 | 0.423265 |
Target: 5'- uCCgCCGCCGGGGg--UAUCGGCGGcUCAg -3' miRNA: 3'- -GG-GGUGGCCCCagaGUGGCUGCC-AGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 111103 | 0.66 | 0.822885 |
Target: 5'- gCCCGgCGGGaccguggccGUCgacggCGCCGGCGGcCGg -3' miRNA: 3'- gGGGUgGCCC---------CAGa----GUGGCUGCCaGU- -5' |
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11142 | 5' | -60.8 | NC_002794.1 | + | 112301 | 0.67 | 0.772491 |
Target: 5'- gCCCC-CCGGGuccgacuUCggCGCCGACGG-CGg -3' miRNA: 3'- -GGGGuGGCCCc------AGa-GUGGCUGCCaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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